View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_high_13 (Length: 471)
Name: NF10977_high_13
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 27333530 - 27333271
Alignment:
| Q |
21 |
aggagaaggcttaaccatgtataaggtttttcgaagaattagaatgcatgtggtagaattgggacgcaacaatggtattttgtgatgtaaatatcaacta |
120 |
Q |
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| T |
27333530 |
aggagaaggcttaaccatgtataaggtttttcaaagaattagaatgcatgtggtagaattgggacgcaacaatggtattttgtgatgtaaatatcaacta |
27333431 |
T |
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| Q |
121 |
atgagagaaatgtgttgagaagactcatcttcttttgttacaaatgaatcattcatataaactatgttgttgaacaatttttcttttatttctctttata |
220 |
Q |
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| T |
27333430 |
atgagagaaatgtgttgagaagactcatcttcttttgttacaaatgaatcattcatataaactatgttgttgaacaatttttcttttatttctctttata |
27333331 |
T |
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| Q |
221 |
tatgtaataatgtagcatttctagatgaagtaaattaaagagagagataccaaatgttta |
280 |
Q |
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| T |
27333330 |
tatgtaataatgtagcatttctagatgaagtaaattaaagagagagataccaaatgttta |
27333271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 280 - 463
Target Start/End: Complemental strand, 27332968 - 27332785
Alignment:
| Q |
280 |
actaaatggaaaaattataactatgtgcaacacaaactcaatattttttctttcactaaaaaataaggttggtcacataataatattcatgaactaactt |
379 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27332968 |
actaaatggaaaaattataactatgtgcaacacaaacacaatattttttctttcactaaaaaataaggttggtcacataataatattcatgaactaactt |
27332869 |
T |
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| Q |
380 |
gaaaactactactaacaactaacattaaatttcacaactaccatacaccaaaacctcatcatcctttaacatgttgttcttctc |
463 |
Q |
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| T |
27332868 |
gaaaactactactaacaactaacattaaatttcacaactaccatacaccaaaacctcatcatcctttaacatgttgttcttctc |
27332785 |
T |
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