View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_high_14 (Length: 462)
Name: NF10977_high_14
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 5110801 - 5110452
Alignment:
| Q |
1 |
atagcaagaatgagcttttataatatttcttagaaacacatttaaaataagcttcacatgtatcagcnnnnnnnnnnnnnngcttcgcatccgaccaagg |
100 |
Q |
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| T |
5110801 |
atagcaaaaatgagctttaataatatttcttagaaacacatttaaaataagcttcacatgtatcagcaaaaaaataaaaaagcttcgcatccgaccaagg |
5110702 |
T |
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| Q |
101 |
agcagaaataaaaagggttgtggtgactgattttctccacaatgagatcataagaaacaaatgaataaacttcatatgaagtgttcaccatggtttgaaa |
200 |
Q |
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| T |
5110701 |
agcagaaataaaaagggttgtggtgactgattttctccacaatgagatcataagaaacaaatgaataaacttcatatgaagtgttcaccatggtttgaaa |
5110602 |
T |
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| Q |
201 |
aattctttaccccatggatatgggtggaaatagaccatctcaagaattagagatgacaatcaactagcttctcannnnnnnnnnnaagaaactaaaaaac |
300 |
Q |
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| T |
5110601 |
aattctttaccccatggatatgggtggaaataggtcatctcaagaattagagatgacaatgaactagcttc----aattttttttaagaaactaaaaaac |
5110506 |
T |
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| Q |
301 |
ttctaaaaattaataaactaatttaagtgagtgggatagattcaacttttactt |
354 |
Q |
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| T |
5110505 |
ttctaaaaattaataaactaatttaagtgagtgggatagattcaacttttactt |
5110452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 396 - 447
Target Start/End: Complemental strand, 5110410 - 5110359
Alignment:
| Q |
396 |
tttggggtaagtagcatattaaccagcaaaaatcaaagggattatgaaaaaa |
447 |
Q |
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| T |
5110410 |
tttggggtaagtagcatattaaccagcaaaaatcaaagggattatgaaaaaa |
5110359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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