View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_high_16 (Length: 391)
Name: NF10977_high_16
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 377
Target Start/End: Original strand, 14782662 - 14783032
Alignment:
| Q |
7 |
gtgagatgaataacacaattgagatttgaaaaagtgattttttgtttcactatgatggctgagagaatgagattgaaaacaagctgtgaagatagcaaaa |
106 |
Q |
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| T |
14782662 |
gtgagaagaataacacaattgagatttgaaaaagtgattttttgtttcactatgatggctgagagaatgagattgaaaacaagctgtgaagatagcaaaa |
14782761 |
T |
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| Q |
107 |
gtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaattgatagggttaacatttt |
206 |
Q |
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| T |
14782762 |
gtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaattgatagggttaacatttt |
14782861 |
T |
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| Q |
207 |
tggtgtgaaatcagtgaaagggtttcttttggtgagattgaagagataagggagaaaaattgggatgatcaagagagggaagccagcacattgaacccaa |
306 |
Q |
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| T |
14782862 |
cggtgtgaaatcagtgaaagggtttcttttggtgagattgaagagataagggagaaaaattgggatgatcaagagagggaagccagcacattgaacccaa |
14782961 |
T |
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| Q |
307 |
gttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttgatgaggttgaacc |
377 |
Q |
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| T |
14782962 |
gttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttgatgagattgaacc |
14783032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 14774797 - 14775146
Alignment:
| Q |
19 |
acacaattgagatttgaaaaagtgattttttgtttcactatgatggctgagagaatgagattgaaaacaagctgtgaagatagcaaaagtgctgaagttg |
118 |
Q |
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| T |
14774797 |
acacagttgagatttgaaaaggtgattttttgcttcacaatgataacagaaagaacaagattgaaaactagctgtgaagataacaaaagggctgaggttg |
14774896 |
T |
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| Q |
119 |
aaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaattgatagggttaacatttttggtgtgaaatc |
218 |
Q |
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| T |
14774897 |
aaacaggtagatatgaatttccccatgagaagaaaaggttattgacacccaacataacaccaatggaaattgataaagttaacatctttgggttgaaatc |
14774996 |
T |
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| Q |
219 |
agtgaaagggtttcttttggtgagatt--gaaga-gataagggagaaaaattgggatgatcaagagagggaagccagcacattgaacccaagttgagacc |
315 |
Q |
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| T |
14774997 |
tgaaaagggttttctttttgttgaatttagaagataataaggtgaaaaaattgggactaataagagaggaaaacctgaagattgaacccaagttgaaacc |
14775096 |
T |
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| Q |
316 |
catttgcttgaacctttgtggatgaaatagtattttgagagtaaacttga |
365 |
Q |
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| T |
14775097 |
catctactagaacctttatggataaaatagtactttgagagtaaacttga |
14775146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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