View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10977_high_20 (Length: 366)

Name: NF10977_high_20
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10977_high_20
NF10977_high_20
[»] chr4 (1 HSPs)
chr4 (18-339)||(24222425-24222742)
[»] chr6 (2 HSPs)
chr6 (18-96)||(7200068-7200146)
chr6 (25-69)||(29337608-29337652)
[»] chr2 (2 HSPs)
chr2 (18-99)||(9684907-9684988)
chr2 (18-71)||(44686951-44687004)
[»] chr1 (2 HSPs)
chr1 (18-71)||(15585394-15585447)
chr1 (25-99)||(28040619-28040693)
[»] chr8 (5 HSPs)
chr8 (39-99)||(36006054-36006114)
chr8 (34-69)||(25021324-25021359)
chr8 (25-99)||(37517630-37517704)
chr8 (25-66)||(24125568-24125609)
chr8 (23-99)||(42921622-42921698)
[»] chr5 (2 HSPs)
chr5 (25-66)||(433833-433874)
chr5 (25-66)||(27337234-27337275)
[»] chr3 (1 HSPs)
chr3 (34-99)||(53786258-53786323)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 24222425 - 24222742
Alignment:
Q  18 caatagagatagttaaaagaaaatcttgagcatgtgatgcttgcaaacacccaagcattactttctctcttgtggtcatgtcttattattccaagtagat 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |    
T  24222425 caatagagatagttaaaagaaaattttgagcatgtgatgcttgcaaacacccaacaattactttctctcttgtggtcatgtcttattattccaagtagtt 24222524  T
Q  118 tcaaatttctcaaatttcaaattatcaataagttcaacatgtgtgagttttgtaagctcttgattcgattcttaatcataaacaaacagacaannnnnnn 217  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||           
T  24222525 tcaaatttctcaaatttcaaattatcaataagaacaacatgtgtgagttttgtaaactcttgattcgattcttaatcataaacaaacagacaa-tttttt 24222623  T
Q  218 nnngtggaaaagcctataataataactagggctcaccactccccaacgtctaccctgggttagaagtccacccacttccaacgtaagatacatgcaagtg 317  Q
       ||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24222624 tttgtggaaaagcct---ataataactagggctcaccacttcccaacgtctaccctgggttagaagtccacccacttccaacgtaagatacatgcaagtg 24222720  T
Q  318 aattaccttatatagttatact 339  Q
    ||||||||||||||||||||||    
T  24222721 aattaccttatatagttatact 24222742  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 7200146 - 7200068
Alignment:
Q  18 caatagagatagttaaaagaaaatcttgagcatgtgatgcttgcaaacacccaagcattactttctctcttgtggtcat 96  Q
    |||| ||||||| || ||||||||| |||||||||  | ||||| |||||||||| | |||||||| ||||||||||||    
T  7200146 caattgagatagctagaagaaaatcctgagcatgttcttcttgccaacacccaagaactactttctgtcttgtggtcat 7200068  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 29337652 - 29337608
Alignment:
Q  25 gatagttaaaagaaaatcttgagcatgtgatgcttgcaaacaccc 69  Q
    ||||| || ||||||||| |||||||||| |||||||||||||||    
T  29337652 gatagctagaagaaaatcctgagcatgtgctgcttgcaaacaccc 29337608  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 9684988 - 9684907
Alignment:
Q  18 caatagagatagttaaaagaaaatcttgagcatgtgatgcttgcaaacacccaagcattactttctctcttgtggtcatgtc 99  Q
    |||||| ||||| || |||||||||||||| ||||| |||||||||||| ||||  ||| | |||| ||| |||||||||||    
T  9684988 caatagggatagctagaagaaaatcttgagtatgtgctgcttgcaaacatccaaaaattgccttctgtctcgtggtcatgtc 9684907  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 44686951 - 44687004
Alignment:
Q  18 caatagagatagttaaaagaaaatcttgagcatgtgatgcttgcaaacacccaa 71  Q
    |||| ||||||| || ||||||||||| |||||||| |||||||||||| ||||    
T  44686951 caattgagatagctagaagaaaatcttaagcatgtgctgcttgcaaacatccaa 44687004  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 15585394 - 15585447
Alignment:
Q  18 caatagagatagttaaaagaaaatcttgagcatgtgatgcttgcaaacacccaa 71  Q
    |||||| ||||| |||||| |||||||||||||||| |||||||||| ||||||    
T  15585394 caatagggatagctaaaagtaaatcttgagcatgtgttgcttgcaaatacccaa 15585447  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 28040693 - 28040619
Alignment:
Q  25 gatagttaaaagaaaatcttgagcatgtgatgcttgcaaacacccaagcattactttctctcttgtggtcatgtc 99  Q
    ||||| || |||||||||||||||||||  |||||||||||| ||||  ||| | |||| ||| |||||||||||    
T  28040693 gatagctagaagaaaatcttgagcatgttctgcttgcaaacatccaaaaattgccttctgtctcgtggtcatgtc 28040619  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 36006054 - 36006114
Alignment:
Q  39 aatcttgagcatgtgatgcttgcaaacacccaagcattactttctctcttgtggtcatgtc 99  Q
    ||||||||||||||| ||||||||||| | | || ||| |||||| |||||||||||||||    
T  36006054 aatcttgagcatgtgttgcttgcaaaccctccagaattgctttctatcttgtggtcatgtc 36006114  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 25021359 - 25021324
Alignment:
Q  34 aagaaaatcttgagcatgtgatgcttgcaaacaccc 69  Q
    |||||||||||||||||||| |||||||||||||||    
T  25021359 aagaaaatcttgagcatgtgctgcttgcaaacaccc 25021324  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 37517630 - 37517704
Alignment:
Q  25 gatagttaaaagaaaatcttgagcatgtgatgcttgcaaacacccaagcattactttctctcttgtggtcatgtc 99  Q
    |||| ||| ||||||||| |||||||||| |||||||||||| ||||  ||||  |||| ||| |||||||||||    
T  37517630 gatacttagaagaaaatcatgagcatgtgctgcttgcaaacatccaaaaattatcttctatctcgtggtcatgtc 37517704  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 24125568 - 24125609
Alignment:
Q  25 gatagttaaaagaaaatcttgagcatgtgatgcttgcaaaca 66  Q
    ||||| || ||||||||| |||||||||||||||||||||||    
T  24125568 gatagctagaagaaaatcctgagcatgtgatgcttgcaaaca 24125609  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 42921698 - 42921622
Alignment:
Q  23 gagatagttaaaagaaaatcttgagcatgtgatgcttgcaaacacccaagcattactttctctcttgtggtcatgtc 99  Q
    ||||||| || ||||||||| | |||||||| ||||||||||||||  |  ||||| |||| ||| |||||||||||    
T  42921698 gagatagctagaagaaaatcctaagcatgtgttgcttgcaaacaccttaaaattaccttctatctagtggtcatgtc 42921622  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 433833 - 433874
Alignment:
Q  25 gatagttaaaagaaaatcttgagcatgtgatgcttgcaaaca 66  Q
    ||||| || |||||||||||||||||||| ||||||||||||    
T  433833 gatagctagaagaaaatcttgagcatgtggtgcttgcaaaca 433874  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 27337234 - 27337275
Alignment:
Q  25 gatagttaaaagaaaatcttgagcatgtgatgcttgcaaaca 66  Q
    ||||| ||||||||||||||||||||||| || |||||||||    
T  27337234 gatagctaaaagaaaatcttgagcatgtggtggttgcaaaca 27337275  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 53786258 - 53786323
Alignment:
Q  34 aagaaaatcttgagcatgtgatgcttgcaaacacccaagcattactttctctcttgtggtcatgtc 99  Q
    |||||||||||||||||||| |||||||||||| ||||  ||| | || | ||| |||||||||||    
T  53786258 aagaaaatcttgagcatgtggtgcttgcaaacatccaaaaattgccttatgtctcgtggtcatgtc 53786323  T

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