View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_high_21 (Length: 363)
Name: NF10977_high_21
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 33 - 349
Target Start/End: Original strand, 20815549 - 20815862
Alignment:
| Q |
33 |
ttaaggcaactactccattcattcc-actgactgcatgaataattaataaaacatacaaaagaaaaacggaaagtaatacaaccttttatttcacagctt |
131 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
20815549 |
ttaaggcaactactccattcattcccactgactgcatga----ttaataaaacatacaaaagaaaaacggaaagtagtgcaaccttttatttcacagctt |
20815644 |
T |
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| Q |
132 |
atatatatcatgttttctggcccaagcatgcatgcatatagaattaaaatatgaagttcaaagattgatttgactgaattcagtgccgacaatattagtc |
231 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20815645 |
atatatatcatgttttctggcccaggcatgcatgcatatagaattaaaatatgaagttcaaggattgatttgactgaattcagtgccgacaatattagtc |
20815744 |
T |
|
| Q |
232 |
caaataattgtgtttataattaattttattgaactaaagttagtagtctcaagcagatataatgcatagatcccacctctatatatgtgaataatgtgat |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20815745 |
caaataattgtgtttataattaattttattgaactaaagttagtagtctcaagcagatataatgcatagatcccacctctatatatgtgaataatgtgat |
20815844 |
T |
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| Q |
332 |
agttggagagttatcctc |
349 |
Q |
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|||||||||||||||||| |
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| T |
20815845 |
agttggagagttatcctc |
20815862 |
T |
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