View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_high_22 (Length: 349)
Name: NF10977_high_22
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 34407100 - 34407411
Alignment:
| Q |
11 |
gaagaatatatcagagtgtggaaatacaacaacaaaggcatttatatgataaagtctgcatactagtccgcaatggaaacactcattgacaatgaggagt |
110 |
Q |
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| T |
34407100 |
gaagaatatatcagagtgtggaaatacaacaacaaaggcatttatatgataaagtctgcatactagtccgcaatggaaacactcattgacaatgaggagt |
34407199 |
T |
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| Q |
111 |
atcgaatttaaggtgattggagtaaactatagagctt---acaaatacctcaaagagttaaaagatttttgtggagagtatcgagaggatgtcttccaac |
207 |
Q |
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| T |
34407200 |
atcgaatttaaggtgattggagtaaactatatagcttcttacaaatacctcaaagagttaaaagatttttgtggagagtagcgagaggatgtcttccaac |
34407299 |
T |
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| Q |
208 |
aagagaccgactacaatggaaaggtgttcaatgtacatatgcatgtcctttttgtaaaaatcactacgaaaatgaatggcgtttgttcctcggttgcaga |
307 |
Q |
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| T |
34407300 |
aagagaccgactacaatggaaaggtgttcaatgtacatatgcatgtcctttttgtaaaaatcactactaaaatgaatggcatttgttcctcggttgcaga |
34407399 |
T |
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| Q |
308 |
aagcctaaggaa |
319 |
Q |
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| T |
34407400 |
aagcctaaggaa |
34407411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 269
Target Start/End: Original strand, 2422098 - 2422287
Alignment:
| Q |
80 |
gcaatggaaacactcattgacaatgaggagtatcgaatttaaggtgattggagtaaactatagagcttacaaatacctcaaagagttaaaagatttttgt |
179 |
Q |
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| T |
2422098 |
gcaatggaaacactcattgataatgagaagtatcgaattccgagtgattggggtaagctatgaagcttgaagataccacaaagagttaaaatattattgt |
2422197 |
T |
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| Q |
180 |
ggagagtatcgagaggatgtcttccaacaagagaccgactacaatggaaaggtgttcaatgtacatatgcatgtcctttttgtaaaaatc |
269 |
Q |
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| T |
2422198 |
ggcgagttgtgaaaggttgcctttcaacaagggatatatttcaaagaaaaggtgttcaatgtacaaatgcatgtcctttttgtgaaaatc |
2422287 |
T |
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