View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10977_high_23 (Length: 338)
Name: NF10977_high_23
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 323
Target Start/End: Original strand, 8927641 - 8927955
Alignment:
| Q |
10 |
gcacagagtaattgctcaaacagatggtgctagaatgtccatagcttcattctacaatccagggaatgatgctgtaatctcaccagcttcaaccttatta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8927641 |
gcacagagtaattgctcaaacagatggtgctagaatgtccatagcttcattctacaatccagggaatgatgctgtaatctcaccagcttcaaccttattg |
8927740 |
T |
|
| Q |
110 |
aaggaagatgaaacaagtgaaatttatccaaaatttatctttgatgattacatgaaactctatatgggactcaaattccaagctaaagagcctagatttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8927741 |
aaggaagatgaaacaagtgaaatttatccaaaatttatctttgatgattacatgaaactctatatgggactcaaattccaagctaaagagcctagatttg |
8927840 |
T |
|
| Q |
210 |
aagctatgatgaaagccatgtcaagtgttgaagtgggacccgtagtaaccatat-nnnnnnnntgcatattattagattgattatgtgtggttttgttaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8927841 |
aagctatgatgaaagccatgtcaagtgttgaagtgggacccgtagtaaccatataaaaaaaaatgcatattattagattgattatgtgtggttttgttaa |
8927940 |
T |
|
| Q |
309 |
taagctgagattatt |
323 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8927941 |
taagctgagattatt |
8927955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 55528423 - 55528581
Alignment:
| Q |
17 |
gtaattgctcaaacagatggtgctagaatgtccatagcttcattctacaatccagggaatgatgctgtaatctcaccagcttcaaccttattaaagga-- |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||| || || ||||| ||||| || |||| | ||||| |
|
|
| T |
55528423 |
gtaattgctcaaacagatgggaaaagaatgtccatagcttcattttataatccaggcaatgacgcagtgatctctccagcaccagccttggtgaaggaat |
55528522 |
T |
|
| Q |
115 |
-agatgaaacaagtgaaatttatccaaaatttatctttgatgattacatgaaactctat |
172 |
Q |
| |
|
||||| |||| || |||| ||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
55528523 |
tagatgtgacaaaccaagtttacccaaagtttgtttttgatgattacatgaaactctat |
55528581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University