View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_high_3 (Length: 738)
Name: NF10977_high_3
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 640; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 12 - 723
Target Start/End: Original strand, 16757927 - 16758638
Alignment:
| Q |
12 |
atgaaccatacggagaaaagaggacaatgacgatggaatttagaaaatgcatcgactctgctaaatgaaatatgaggacacaaggtaataggttagttag |
111 |
Q |
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| T |
16757927 |
atgaacaatatggagaaaagaggacaatgacgatggaatttagaaaatacatcgactctgctaaatgaaatatgaggacacaaggtaataggttagttag |
16758026 |
T |
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| Q |
112 |
ttgattcatgaaagagtatgccaaaaattgatctagaacttggtttgccactgagtcatctgaacatcaatgcatcaaaggagaactcatacgagtatta |
211 |
Q |
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| T |
16758027 |
ttgattcatgcaagagtatgccaaaaattgatctagaacttggtttgccaccgagtcatctgaacatcaatgcatcaaaggagaactcatacgagtatta |
16758126 |
T |
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| Q |
212 |
ttgggttcccaagtcccacatggagtagtataagttgttcggttgagcgtgaacatgttaaatgtgccaataacaatgctatgatttggatgaaatggca |
311 |
Q |
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| T |
16758127 |
tggggttcccaagtcccacatggagtagtataagttgtttggttgagcattaacatgttaaatgtgccaataacaatgctatgatttggatgaaatggca |
16758226 |
T |
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| Q |
312 |
ttgtgttcacttatctattgaaggttttattctttatactttgtctcttattaagtttgcaatttacggtgctaaatctgctgtctcacacgtagtcctc |
411 |
Q |
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| T |
16758227 |
ctgtgttcacttgtctattgaaggttttattctttatactttgtctcttattaagtttgcaatttacggtgctaaatctgctgtctcacacgtagtcctc |
16758326 |
T |
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| Q |
412 |
agggagtttaagacatgcatccttcttctaggaaactattatctctttggatccaatctcagtacaaccagtatatgtggcgcacccgtatctgcctcgc |
511 |
Q |
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| T |
16758327 |
agggagtttaagacatgcatccttcatctaggaaactattatctctttggatcgaatctcagtacaaccagtatatgtggcacacccgtatctgcctcgc |
16758426 |
T |
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| Q |
512 |
attcacagctagcggtggcacatctgtttacacttaccttaatttgaagcagcaatcgaaaaagtttgtcaacacttgtcaaaatttctttatacccttt |
611 |
Q |
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| T |
16758427 |
attcacagctagcggtggcacatctgtttacacttgccttaatttgaagcagcaatcgaaaaagtttgtcaacacttatcaaaatttctttatacccttt |
16758526 |
T |
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| Q |
612 |
tatggctgtcaccatttgctgcatatcgttatggagcctattcggctaccatgtttttgaactgaagcattttaaactttcacggttgaggattaagaca |
711 |
Q |
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| T |
16758527 |
tatggctgtcaccatttgctgcatatcgttatggagcctattcggctaccatgtttttgaactgaagtattttaaactttcacggttggggattaagaca |
16758626 |
T |
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| Q |
712 |
gataaatgtatt |
723 |
Q |
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| T |
16758627 |
gataaatgtatt |
16758638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 328 - 522
Target Start/End: Original strand, 16753409 - 16753603
Alignment:
| Q |
328 |
attgaaggttttattctttatactttgtctcttattaagtttgcaatttacggtgctaaatctgctgtctcacacgtagtcctcagggagtttaagacat |
427 |
Q |
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| T |
16753409 |
attgaacgttttattctttatactctgtctctcattgactttgcaatttagagcgctaaatctgctgtcttgcatgtagtcctcagggagtttaagacat |
16753508 |
T |
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| Q |
428 |
gcatccttcttctaggaaactattatctctttggatccaatctcagtacaaccagtatatgtggcgcacccgtatctgcctcgcattcacagcta |
522 |
Q |
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| T |
16753509 |
gcgttctgctttgaggaaactattatctctttggatccaatctcagtataaccaatatctgcagcgcacccgtgtctgcaacgcattcacagcta |
16753603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 16745350 - 16745476
Alignment:
| Q |
369 |
tgcaatttacggtgctaaatctgctgtctcacacgtagtcctcagggagtttaagacatgcatccttcttctaggaaactattatctctttggatccaat |
468 |
Q |
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| T |
16745350 |
tgcaatttacagtgctacatctgctgtttcgcacgttgtccttgggcagtttaagacatgcatcctgcttctaggaaactattttctctttggatctaat |
16745449 |
T |
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| Q |
469 |
ctcagtacaaccagtatatgtggcgca |
495 |
Q |
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| T |
16745450 |
cctggtacaatcagtatctgcggcgca |
16745476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 568
Target Start/End: Original strand, 16745495 - 16745532
Alignment:
| Q |
531 |
acatctgtttacacttaccttaatttgaagcagcaatc |
568 |
Q |
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| T |
16745495 |
acatctgtttacacttaccttaatatgaagcagcaatc |
16745532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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