View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10977_high_32 (Length: 258)
Name: NF10977_high_32
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 43032360 - 43032191
Alignment:
| Q |
68 |
cggtccaaaatgaaacccattaagtccaatcacaagaatttagcctctgatcaacacaagttcttcgaatcgtaaaaaagataatgaatttacctcnnnn |
167 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43032360 |
cggtcgaaaatgaaacccattaagtccaatcacaagaatttagcctctgatcaacacaagttcatcgaatcgtaaaaaagataatgaatttacctc--aa |
43032263 |
T |
|
| Q |
168 |
nnnnnnnnnnnggtttcagccaaagtagaaagaatcgcgatccaactcgccggaatcgtaatccggtggaag |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43032262 |
aaaccaaaaaaggtttcagccaaagtagaaagaatcgcgatccaactcgccggaatcgtaattcggtggaag |
43032191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 43048089 - 43047997
Alignment:
| Q |
69 |
ggtccaaaatgaaacccattaagtccaatcacaagaatttagcctctgatcaacacaagttcttcgaatcgtaaaaaagataatgaatttacctc |
163 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| | ||||| ||||||||| | |||||||||||| |
|
|
| T |
43048089 |
ggtcaaaaatgaaactcattaagtccaatcacaagaattttgcctctga--aacacaagttcatagaatcataaaaaagagagtgaatttacctc |
43047997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University