View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10977_high_33 (Length: 252)
Name: NF10977_high_33
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 6813108 - 6812882
Alignment:
| Q |
18 |
tatatattcatttcattcaaattaattaagactatgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6813108 |
tatatattcatttcattcaaattaattaatactatgtaggtttggcacttcaaataattggaatgtatccaaagctggtgaatgctgtaaaccatgatgg |
6813009 |
T |
|
| Q |
118 |
attatcacctctccatattcttgctaggaaacctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6813008 |
attatcacctctccatattcttgctaggaaacctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacat |
6812909 |
T |
|
| Q |
218 |
catttttataaaattttctttcttctc |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6812908 |
catttttataaaattttctttcttctc |
6812882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 6819664 - 6819458
Alignment:
| Q |
18 |
tatatattcatttcattcaaattaattaagactatgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6819664 |
tatatattcatttcattcaaattaattaatactatgtaggtttggcaattcaaataattggaatgtatccaaagcttgtgaatgctgtaaatcatgatgg |
6819565 |
T |
|
| Q |
118 |
attatcacctctccatattcttgctaggaaacctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacat |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
6819564 |
attatcacctctgcatattcttgctaggaagcctaattgtttcagaagctgcacaacgatggtgctaattgaacgtattatctacacttgtaagtaacat |
6819465 |
T |
|
| Q |
218 |
cattttt |
224 |
Q |
| |
|
|| |||| |
|
|
| T |
6819464 |
cactttt |
6819458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 6833981 - 6833814
Alignment:
| Q |
52 |
tgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaaacct |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6833981 |
tgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgttgtaaaccatgaaggattatcacctctgcatattcttgctaggaaacct |
6833882 |
T |
|
| Q |
152 |
aattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
6833881 |
aattgtttcagaagctgcacaaggatggagttgattgatcgtatcatttacacttgtaagtaacatca |
6833814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 34778543 - 34778383
Alignment:
| Q |
48 |
actatgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaa |
147 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
34778543 |
actatgtagatttggcacttcaattaattggaatgtatccaaagcttgtgaatgctgtaaac-------------cacctctgcatattcttgctaggaa |
34778457 |
T |
|
| Q |
148 |
acctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatcattttt |
224 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||| || |||||| |||||||||||||||| |||| |
|
|
| T |
34778456 |
gcctaattgtttcagaagtggcacaaggctggagctaattgaacgt---atctacccttgtaagtaacatcactttt |
34778383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University