View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10977_high_35 (Length: 248)

Name: NF10977_high_35
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10977_high_35
NF10977_high_35
[»] chr1 (5 HSPs)
chr1 (7-232)||(42166238-42166469)
chr1 (29-89)||(45010840-45010900)
chr1 (30-91)||(6758546-6758607)
chr1 (27-64)||(26674262-26674299)
chr1 (32-93)||(39216101-39216162)
[»] chr2 (3 HSPs)
chr2 (30-93)||(41805272-41805335)
chr2 (27-93)||(6074812-6074878)
chr2 (26-79)||(6166098-6166151)
[»] chr4 (5 HSPs)
chr4 (27-93)||(36072568-36072634)
chr4 (27-93)||(33693967-33694033)
chr4 (27-64)||(4484101-4484138)
chr4 (27-59)||(24275249-24275281)
chr4 (30-70)||(33377494-33377534)
[»] scaffold0009 (1 HSPs)
scaffold0009 (27-78)||(146044-146095)
[»] chr8 (10 HSPs)
chr8 (27-78)||(29360824-29360875)
chr8 (27-93)||(33070241-33070307)
chr8 (27-93)||(24287783-24287849)
chr8 (29-78)||(2805891-2805940)
chr8 (33-78)||(3444635-3444680)
chr8 (29-78)||(11335645-11335694)
chr8 (27-91)||(7258661-7258725)
chr8 (29-89)||(10117048-10117108)
chr8 (30-78)||(31406295-31406343)
chr8 (30-70)||(34326324-34326364)
[»] chr7 (6 HSPs)
chr7 (27-93)||(23797424-23797490)
chr7 (27-89)||(31813413-31813475)
chr7 (26-59)||(3341922-3341955)
chr7 (27-60)||(4089865-4089898)
chr7 (29-78)||(6847289-6847338)
chr7 (30-78)||(32490668-32490716)
[»] chr3 (3 HSPs)
chr3 (27-93)||(12744899-12744965)
chr3 (27-93)||(10872748-10872814)
chr3 (27-64)||(26121566-26121603)
[»] chr6 (3 HSPs)
chr6 (29-93)||(11746306-11746370)
chr6 (45-91)||(11637263-11637309)
chr6 (29-90)||(11637171-11637232)
[»] chr5 (3 HSPs)
chr5 (27-78)||(5984059-5984110)
chr5 (29-78)||(35032348-35032397)
chr5 (27-93)||(25773319-25773382)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 42166469 - 42166238
Alignment:
Q  7 gtgagatgaagatgctaataaccatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggtacata------ct 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||      ||    
T  42166469 gtgagatgaggatgctaataaccatatacataattaattgaatgaatataaaatgcaaaattttgtttataacggtaaccggagggtacatatccttact 42166370  T
Q  101 tttagatggatgtaaatcaatcatcttctataattaattttctgttttcacactaaaaaacatatttgacattttgattgccctaaattgagtcacctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42166369 tttagatggatgtaaatcaatcatcttctataattaattttctgttttcacactaaaaaacatatttgacattttgattgccctaaattgagtcacctat 42166270  T
Q  201 ttgtttagagcgtacaatgatattaaaggaac 232  Q
    |||||||||||||| |||||||||||||||||    
T  42166269 ttgtttagagcgtagaatgatattaaaggaac 42166238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 45010900 - 45010840
Alignment:
Q  29 catatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccgga 89  Q
    ||||||||| ||||||||||||||| |||||||||| |||||| ||||||  |||||||||    
T  45010900 catatacatcattaattgaatgaatttaaaatgcaaaattttgcttataatagtgaccgga 45010840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 6758607 - 6758546
Alignment:
Q  30 atatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagg 91  Q
    |||||||| ||||||||||||||| ||||||||||  ||||| ||||||  |||||||||||    
T  6758607 atatacatcattaattgaatgaatgtaaaatgcaaagttttgcttataatagtgaccggagg 6758546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 26674262 - 26674299
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaa 64  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  26674262 accatatacatcattaattgaatgaatttaaaatgcaa 26674299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 39216162 - 39216101
Alignment:
Q  32 atacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    |||||| ||||||||||||| | ||||||||||  ||||| ||||||  |||||||||||||    
T  39216162 atacatcattaattgaatgagtctaaaatgcaaagttttgcttataatagtgaccggagggt 39216101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 41805335 - 41805272
Alignment:
Q  30 atatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    |||||||| ||||||||||||||| |||||||||| |||||| ||||||  |||||||||||||    
T  41805335 atatacatcattaattgaatgaatttaaaatgcaaaattttgcttataatagtgaccggagggt 41805272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 6074878 - 6074812
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    |||| |||||||||| | | ||||||| ||||||||||  ||||||||||||  |||||||||||||    
T  6074878 accacatacataattcaataaatgaatctaaaatgcaaagttttgtttataatagtgaccggagggt 6074812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 6166098 - 6166151
Alignment:
Q  26 aaccatatacataattaattgaatgaatataaaatgcaacattttgtttataac 79  Q
    |||||||||||||||| ||||||||||| ||||||| |   |||||||||||||    
T  6166098 aaccatatacataatttattgaatgaatttaaaatgtagatttttgtttataac 6166151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 36072634 - 36072568
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    ||||||||||| || |||||||||||| |||||||||| |||||| ||||||  |||||||||||||    
T  36072634 accatatacatcataaattgaatgaatctaaaatgcaaaattttgcttataatagtgaccggagggt 36072568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 33694033 - 33693967
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    ||||||||||| |||||||||| |||| |||||||||| |||||| ||||||   ||||||||||||    
T  33694033 accatatacatcattaattgaacgaatctaaaatgcaaaattttgcttataattatgaccggagggt 33693967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 4484138 - 4484101
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaa 64  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  4484138 accatatacatcattaattgaatgaatctaaaatgcaa 4484101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 24275281 - 24275249
Alignment:
Q  27 accatatacataattaattgaatgaatataaaa 59  Q
    ||||||||||||||||||||||||||| |||||    
T  24275281 accatatacataattaattgaatgaatctaaaa 24275249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 33377494 - 33377534
Alignment:
Q  30 atatacataattaattgaatgaatataaaatgcaacatttt 70  Q
    |||||||| ||||||||||||||| |||||||||| |||||    
T  33377494 atatacatcattaattgaatgaatctaaaatgcaaaatttt 33377534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 146044 - 146095
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataa 78  Q
    ||||||||||| ||||||||||||||| ||||||||||  ||||||||||||    
T  146044 accatatacatcattaattgaatgaatctaaaatgcaaatttttgtttataa 146095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 29360824 - 29360875
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataa 78  Q
    ||||||||||| ||||||| |||||||||||||||||| |||||| ||||||    
T  29360824 accatatacattattaattaaatgaatataaaatgcaaaattttgcttataa 29360875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 33070241 - 33070307
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    ||||||||||  ||||| ||||||||| |||||||||| |||||| ||||||  |||||||||||||    
T  33070241 accatatacaccattaaatgaatgaatctaaaatgcaaaattttgcttataatagtgaccggagggt 33070307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 24287849 - 24287783
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    ||||||||||| ||| | ||||||||| ||||||||||  ||||| ||||||  |||||||||||||    
T  24287849 accatatacatcatttaatgaatgaatctaaaatgcaaagttttgcttataatagtgaccggagggt 24287783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 2805891 - 2805940
Alignment:
Q  29 catatacataattaattgaatgaatataaaatgcaacattttgtttataa 78  Q
    ||||||||| ||||||||||||||| ||||||| || ||||| |||||||    
T  2805891 catatacattattaattgaatgaatttaaaatgtaaaattttatttataa 2805940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 3444680 - 3444635
Alignment:
Q  33 tacataattaattgaatgaatataaaatgcaacattttgtttataa 78  Q
    ||||| ||||||||||||||||||||||| ||  ||||||||||||    
T  3444680 tacatcattaattgaatgaatataaaatgtaaatttttgtttataa 3444635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 11335645 - 11335694
Alignment:
Q  29 catatacataattaattgaatgaatataaaatgcaacattttgtttataa 78  Q
    ||||||||| ||||||||||||||| ||||||||||  ||||| ||||||    
T  11335645 catatacattattaattgaatgaatctaaaatgcaaagttttgcttataa 11335694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 7258661 - 7258725
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagg 91  Q
    ||||||| ||| ||||||||||||||| ||||||| || |||||  ||||||  |||||||||||    
T  7258661 accatatgcatcattaattgaatgaatctaaaatgtaaaattttacttataatagtgaccggagg 7258725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 10117048 - 10117108
Alignment:
Q  29 catatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccgga 89  Q
    ||||||||| ||||||||||||||| ||||||| ||  ||||| ||||||  |||||||||    
T  10117048 catatacatcattaattgaatgaatctaaaatgtaaatttttgcttataatagtgaccgga 10117108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 31406295 - 31406343
Alignment:
Q  30 atatacataattaattgaatgaatataaaatgcaacattttgtttataa 78  Q
    |||||||||||||||||||||||| ||| |  ||| |||||||||||||    
T  31406295 atatacataattaattgaatgaatctaacaaacaaaattttgtttataa 31406343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 34326324 - 34326364
Alignment:
Q  30 atatacataattaattgaatgaatataaaatgcaacatttt 70  Q
    |||||||| ||||||||||||||| |||||||||| |||||    
T  34326324 atatacatcattaattgaatgaatgtaaaatgcaaaatttt 34326364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 23797424 - 23797490
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    |||| |||||| ||||||||||||||| |||||||||| |||||  ||||||  |||||||||||||    
T  23797424 accagatacatcattaattgaatgaatctaaaatgcaaaattttacttataatagtgaccggagggt 23797490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 31813475 - 31813413
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccgga 89  Q
    ||||||||||| ||||||||||||||| ||||||| ||  ||||||||||||  |||||||||    
T  31813475 accatatacatcattaattgaatgaatctaaaatgtaaatttttgtttataatagtgaccgga 31813413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 3341955 - 3341922
Alignment:
Q  26 aaccatatacataattaattgaatgaatataaaa 59  Q
    |||||||||||| |||||||||||||||||||||    
T  3341955 aaccatatacatcattaattgaatgaatataaaa 3341922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 4089865 - 4089898
Alignment:
Q  27 accatatacataattaattgaatgaatataaaat 60  Q
    ||||||||||| ||||||||||||||||||||||    
T  4089865 accatatacatcattaattgaatgaatataaaat 4089898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 6847338 - 6847289
Alignment:
Q  29 catatacataattaattgaatgaatataaaatgcaacattttgtttataa 78  Q
    ||||||||| ||||||||||| ||||||||||||||  ||||| ||||||    
T  6847338 catatacatcattaattgaataaatataaaatgcaaatttttgcttataa 6847289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 32490668 - 32490716
Alignment:
Q  30 atatacataattaattgaatgaatataaaatgcaacattttgtttataa 78  Q
    |||||||| |||||| |||||||| | |||||||| |||||||||||||    
T  32490668 atatacatcattaatggaatgaatgtgaaatgcaaaattttgtttataa 32490716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 12744965 - 12744899
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    ||||||||||| ||||||||||||||| ||||||| ||  ||||| ||||||  |||||||||||||    
T  12744965 accatatacatcattaattgaatgaatctaaaatgtaagtttttgcttataatagtgaccggagggt 12744899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 10872748 - 10872814
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    ||||||||||| ||||||||||||||| ||||||  ||  ||||| ||||||  |||||||||||||    
T  10872748 accatatacatcattaattgaatgaatctaaaatataaatttttgcttataatagtgaccggagggt 10872814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 26121603 - 26121566
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaa 64  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  26121603 accatatacatcattaattgaatgaatctaaaatgcaa 26121566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 11746306 - 11746370
Alignment:
Q  29 catatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    ||||||||| ||||||||||||||| ||||||| ||  |||| |||||||| |||||| ||||||    
T  11746306 catatacatcattaattgaatgaatctaaaatgtaaatttttttttataacagtgaccagagggt 11746370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 11637263 - 11637309
Alignment:
Q  45 tgaatgaatataaaatgcaacattttgtttataacggtgaccggagg 91  Q
    |||||||||||||||||||| ||||| |||||||| |||| ||||||    
T  11637263 tgaatgaatataaaatgcaatattttatttataacagtgatcggagg 11637309  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 11637232 - 11637171
Alignment:
Q  29 catatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggag 90  Q
    ||||||||| ||||||||||||||| ||||||| ||  ||||| ||||||  ||||||||||    
T  11637232 catatacatcattaattgaatgaatttaaaatgtaatgttttgcttataatagtgaccggag 11637171  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 5984059 - 5984110
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataa 78  Q
    ||||||||||| ||||||||||||||| ||||||||||  ||||| ||||||    
T  5984059 accatatacatcattaattgaatgaatctaaaatgcaaagttttgcttataa 5984110  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 35032348 - 35032397
Alignment:
Q  29 catatacataattaattgaatgaatataaaatgcaacattttgtttataa 78  Q
    ||||||||||||||||||||||||| ||||||| ||  ||||| ||||||    
T  35032348 catatacataattaattgaatgaatctaaaatgtaaatttttgcttataa 35032397  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 25773319 - 25773382
Alignment:
Q  27 accatatacataattaattgaatgaatataaaatgcaacattttgtttataacggtgaccggagggt 93  Q
    ||||||||||| ||||||||| ||||| ||||||| ||  |||||||||||   |||||||||||||    
T  25773319 accatatacatcattaattgattgaatgtaaaatgtaaatttttgtttata---gtgaccggagggt 25773382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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