View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_high_5 (Length: 591)
Name: NF10977_high_5
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 115 - 578
Target Start/End: Original strand, 43032516 - 43032979
Alignment:
| Q |
115 |
agctagggtttctggtgttattctcttttatgaaatgtttgtgatatatgctgtaatatctgaaattgaaactggttaaaattgattctgcaactttgtt |
214 |
Q |
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| T |
43032516 |
agctagggtttctggtgttattctcttttatgacatgtttgtgatatatgctgtaatatctgaaattgaaactggttaaaattgattctgcaactttgtt |
43032615 |
T |
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| Q |
215 |
cctgtgcctatacttgttttgtagttggatctattcacttactgataattgattagtttatgctacaagccttgttaaattcactttagggtttatgaac |
314 |
Q |
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| T |
43032616 |
cctgtgcctatacttgttttgtagttggatctattcacttactgataattgattagtttatgctacaagccgtgttaaattcactttagggtttatgaac |
43032715 |
T |
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| Q |
315 |
tgcttgattttatagatttgtatggctagctatgagattcttcaattgaattggttcagggtttctgttcaatatatgccctaatgattttgtaactgtg |
414 |
Q |
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| T |
43032716 |
tgcttgattttataggtttgtatggctagctatgagattcttcaattgaattggttcagggtttctgttcaatatatgccctaatgattttgtaattgtg |
43032815 |
T |
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| Q |
415 |
attgtcaaagtcttgagctgacttgtacaattgttacggaattataattctaggtatgaaaattgagtcaacttgtttacacaaactcctgtagaatggc |
514 |
Q |
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| T |
43032816 |
attgtcaaagtcttgagctgacttgtacaattgttatgaaattataattctaggtatgaaaattgagtcaacttgtttacacaaactcctgtagaatggg |
43032915 |
T |
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| Q |
515 |
tcaaactaagtgattccagtgtgttccggaaataacccatccttgatattaacccccatctctg |
578 |
Q |
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| T |
43032916 |
tcaaactaggtgatttcagtgtgttccggaaataacccatccttgatattaacccccatctctg |
43032979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 115 - 316
Target Start/End: Original strand, 43048235 - 43048435
Alignment:
| Q |
115 |
agctagggtttctggtgttattctcttttatgaaatgtttgtgatatatgctgtaatatctgaaattgaaactggttaaaattgattctgcaactttgtt |
214 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||||||||| |
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| T |
43048235 |
agctaggatttctggtgttattctcttttatgtcatgtttgtgatatatgctgtaacatctgaaattgaaacttgttagaattgattttgcaactttgtt |
43048334 |
T |
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| Q |
215 |
cctgtgcctatacttgttttgtagttggatctattcacttactgataattgattagtttatgctacaagccttgttaaattcactttagggtttatgaac |
314 |
Q |
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| T |
43048335 |
cctgtacctatgcttgctttgtagttggatctattcacttagtgataattgattagtttatgttacaagccttgtt-aattcaatttagggtttatgaac |
43048433 |
T |
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| Q |
315 |
tg |
316 |
Q |
| |
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|| |
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| T |
43048434 |
tg |
43048435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 43032418 - 43032462
Alignment:
| Q |
17 |
tcaatgtagcttcttatgtcattctcattgtgcggatgattgtgt |
61 |
Q |
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| T |
43032418 |
tcaatgtagcttcttatgtcattctcattgtgcggatgattgtgt |
43032462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 43048136 - 43048180
Alignment:
| Q |
17 |
tcaatgtagcttcttatgtcattctcattgtgcggatgattgtgt |
61 |
Q |
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| T |
43048136 |
tcaatgtagcttcttatgtcattctcattgtttggatgattgtgt |
43048180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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