View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10977_high_7 (Length: 585)
Name: NF10977_high_7
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_high_7 |
 | |
|
| [»] chr3 (19 HSPs) |
| |
|
| [»] scaffold0201 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 32 - 585
Target Start/End: Original strand, 23351374 - 23351925
Alignment:
| Q |
32 |
agttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaattcgagggagagaaaagatgg |
131 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
23351374 |
agtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaatataagtcgagggagagaaaagatgg |
23351473 |
T |
|
| Q |
132 |
atggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatctcaatcagatctttggagga |
231 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23351474 |
atggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtctgggatctcaatcagatctttggagga |
23351573 |
T |
|
| Q |
232 |
ctgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaaacaaaacctagctctactgcaat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23351574 |
ttgaagcataattgatcttagattcacaagattctgtaataagaaataaacatgcatgagttttgattaaaagagaaacaaaacctagctctactgcaat |
23351673 |
T |
|
| Q |
332 |
tttgagaataacattagatcattcctcttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagca |
431 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23351674 |
tttgtgaatagcattaga--cttcctcttgtacctgaactccatcccagagctttttaagcttgcaatgagtcatgtgaagctcaataagcatttcagca |
23351771 |
T |
|
| Q |
432 |
caaaaggttgatggcaaagactcaagacaatatccatcccattgaaggtacctcaatttatcagaaagacactcgagaccgtcaggtaagtgtacattgc |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23351772 |
caaaaggttgatggcaaagactcaagacaatatccatcccattgaaggtacctcaatttatcagaaagacactcgagaccgtcaggtaagtgtacattgc |
23351871 |
T |
|
| Q |
532 |
atatgctcccgttggatatattataataaatatcaagatatcttaagtttgtca |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23351872 |
atatgctcccgttggatatattataataaatatcaagatatcttaagtttgtca |
23351925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 541
Target Start/End: Original strand, 23385689 - 23386221
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
23385689 |
gagatgaacaaccattgagtaaaagtacacagagagattttgaatgaatgttggatttaaggctttcaatctttatgcaacctcttaaatctagatatat |
23385788 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||| ||||||||| |||||||||||||||| ||| |
|
|
| T |
23385789 |
aattcgagggagagaaaagatggatggatggagctgacgcaggctttcacattccgagagatgtattctgtcaagatttatagccctagataagtctggg |
23385888 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaa |
308 |
Q |
| |
|
||||||||||||||||||||||| | |||| || | |||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
23385889 |
atctcaatcagatctttggaggattcaagccaaagtactcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
23385988 |
T |
|
| Q |
309 |
acaaaa-------------cctagctctactgcaattttgagaataacattagatcattcctcttgtacctgaactccatcccagagctttttaagcttg |
395 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23385989 |
acaaaacctagttaaacatcctagctctgctgcaattttgtgaaaaacat-------------ttgtacctgaactccatcccagagctttttaagcttg |
23386075 |
T |
|
| Q |
396 |
ctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaagacaatatccatcccattgaaggtacctcaatttatcag |
495 |
Q |
| |
|
|| ||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||| |||||||||||||| | |
|
|
| T |
23386076 |
ctttgattcatgcaaagctctacaagcatttcagcacaaaaggttgatggcaaagactcaagacagtatcttttccatcgaagatacctcaatttatccg |
23386175 |
T |
|
| Q |
496 |
aaagacactcgagaccgtcaggtaagtgtacattgcatatgctccc |
541 |
Q |
| |
|
||| ||||| ||||||||||| |||| ||||||| | ||||||| |
|
|
| T |
23386176 |
aaatccactcaagaccgtcaggaaagtacacattgcctgtgctccc |
23386221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 585
Target Start/End: Original strand, 23404060 - 23404633
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
23404060 |
gagatgaacaaccattgagtaagagttgacaaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatattg |
23404159 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| | ||||||||||||||||||||||||| ||| |
|
|
| T |
23404160 |
aagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaatagcaagatttgtagccctagataagtctggg |
23404259 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaa |
308 |
Q |
| |
|
||||||||||||||||||||||| | |||| || || |||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
23404260 |
atctcaatcagatctttggaggattcaagccaaagtgttcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
23404359 |
T |
|
| Q |
309 |
acaaaacctag-------------ctctactgcaattttgagaataacattagatcattcctcttgtacctgaactccatcccagagctttttaagcttg |
395 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23404360 |
acaaaacctagttaaacatcctagctctgctgcaattttgtgaaaaacatt-------------tgtacctgaactccatcccagagctttttaagcttg |
23404446 |
T |
|
| Q |
396 |
ctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaagacaatatccatcccattgaaggtacctcaatttatcag |
495 |
Q |
| |
|
|| |||| |||| |||||| | |||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||| |||||||||||||||| |
|
|
| T |
23404447 |
ctttgagccatgcaaagctctacaagcatttcagcacaaaaagttgatggcaaagactcaagacaatatcttttccatcgaagatacctcaatttatcag |
23404546 |
T |
|
| Q |
496 |
aaagacactcgagaccgtcaggtaagtgtacattgcatatgctcccgttggatatattataataaatatcaagatatcttaagtttgtca |
585 |
Q |
| |
|
||| ||||| ||||||||||| |||| ||||||| | ||||||| | ||| | || ||| |||| |||||||||||||||||||| |
|
|
| T |
23404547 |
aaatccactcaagaccgtcaggaaagtacacattgcctgtgctcccatcagat---tcattatagatattaagatatcttaagtttgtca |
23404633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 23439253 - 23439564
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||| |||| | |||||||||| |||||||||| |||| |
|
|
| T |
23439253 |
gagatgaacaaccatccagtaagagttcacgaagagattttgaatgaatgttcgttttaaggctttcaatagtaatgcaacctcctaaatctagaaatgt |
23439352 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||| || ||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
23439353 |
aagtcgagggagagaaaagatggatggatggagctgacgcaagctttcacattgacagagagatgctcttccaagatttgtagccctagataagtcgggg |
23439452 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttaga-ttcacaagattctgtaataataaataaacatgcatgagttttgattaaaagaga |
307 |
Q |
| |
|
||||||||||||||||||||| | | ||| |||| ||||| || |||||||||||||| || |||||||||||||| ||| |||||||||||||| |
|
|
| T |
23439453 |
atctcaatcagatctttggagtaattaaggcagattgtgattagattttacaagattctgtaacaagaaataaacatgcataagtgttgattaaaagaga |
23439552 |
T |
|
| Q |
308 |
aacaaaacctag |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23439553 |
aacaaaacctag |
23439564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 359 - 585
Target Start/End: Original strand, 23472205 - 23472428
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||| || |
|
|
| T |
23472205 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaagactcagga |
23472304 |
T |
|
| Q |
459 |
caatatccatcccattgaaggtacctcaatttatcagaaagacactcgagaccgtcaggtaagtgtacattgcatatgctcccgttggatatattataat |
558 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||| | |
|
|
| T |
23472305 |
caatatccctcccattgaaggtacctcaatttatcagaaagccactcgagaccatcaggaaaatgtacattgcatatgctcccgttggatatattatga- |
23472403 |
T |
|
| Q |
559 |
aaatatcaagatatcttaagtttgtca |
585 |
Q |
| |
|
|| | |||||||||||||||||||| |
|
|
| T |
23472404 |
--atcttaagatatcttaagtttgtca |
23472428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 23462679 - 23462989
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||||||||||||| | |||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
23462679 |
gagatgaacaaccattgagtaagagttgacgaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatattg |
23462778 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||| ||| |
|
|
| T |
23462779 |
aagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaacaacaagatttgtagccctagataagtctggg |
23462878 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaa |
308 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
23462879 |
atctcaatcagatctttggaggatcgaagccaaagtgttcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
23462978 |
T |
|
| Q |
309 |
acaaaacctag |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
23462979 |
acaaaacctag |
23462989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 359 - 582
Target Start/End: Original strand, 23439670 - 23439890
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
458 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
23439670 |
ttgtacctgaactccatctcagagatttttaagcttgctatgagtcatgctaagctctacaagcatttcagcacaaaagtttgatggaaaagactaaaga |
23439769 |
T |
|
| Q |
459 |
caatatccatcccattgaaggtacctcaatttatcagaaagacactcgagaccgtcaggtaagtgtacattgcatatgctcccgttggatatattataat |
558 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||| | |
|
|
| T |
23439770 |
caatatccctcccattgaaggtacctcaatttatcagaaagccactcgagaccatcaggaaaatgtacattgcatatgctcccgttggatatattatga- |
23439868 |
T |
|
| Q |
559 |
aaatatcaagatatcttaagtttg |
582 |
Q |
| |
|
|| | ||||||||||||||||| |
|
|
| T |
23439869 |
--atcttaagatatcttaagtttg |
23439890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 41 - 319
Target Start/End: Original strand, 23471821 - 23472099
Alignment:
| Q |
41 |
agagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaattcgagggagagaaaagatggatggatgga |
140 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| | |||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
23471821 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggagagaaaagatgtatggatgga |
23471920 |
T |
|
| Q |
141 |
gttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatctcaatcagatctttggaggactgaagcat |
240 |
Q |
| |
|
| |||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||| | |
|
|
| T |
23471921 |
gatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggct |
23472020 |
T |
|
| Q |
241 |
aattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaaacaaaacctag |
319 |
Q |
| |
|
|| || |||||||||||||||||||||| || |||||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
23472021 |
aaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagagaaacaaaacctag |
23472099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 23498403 - 23498675
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| | |
|
|
| T |
23498403 |
gagaagaacaaccatcgagtaagagttcacaaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatct |
23498502 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| ||||||||||||||| || | |||||| |||| ||||||||||||| || ||||||||||| | ||||||||||||| |||||||||| ||| |
|
|
| T |
23498503 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctggg |
23498602 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaa |
281 |
Q |
| |
|
||||||||||||| ||||||||| | |||| || | |||||||||||||||||||||| || ||||||| |
|
|
| T |
23498603 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
23498675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 23477960 - 23478226
Alignment:
| Q |
15 |
aacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaattcg |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
23477960 |
aacaaccatcaagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaagatc |
23478059 |
T |
|
| Q |
115 |
agggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatctca |
214 |
Q |
| |
|
||||||||||||||| || | |||||| |||| ||||||||||||| || ||||||||||| | ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
23478060 |
agggagagaaaagatagaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctgggatctca |
23478159 |
T |
|
| Q |
215 |
atcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaa |
281 |
Q |
| |
|
||||||| ||||||||| | |||| || | |||||||||||||||||||||| || ||||||| |
|
|
| T |
23478160 |
atcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
23478226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 23446654 - 23446926
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||| ||| ||||||||||||| | |
|
|
| T |
23446654 |
gagatgcacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcagtctcgtaaatctagatatct |
23446753 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| |||||||||||||||||| |||||||| |||| ||||||||||||| || ||||||||||| | ||||||||||||| |||||||||| ||| |
|
|
| T |
23446754 |
aagatcagggagagaaaagatggaaggatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctggg |
23446853 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaa |
281 |
Q |
| |
|
||||||||||||| ||||||||| | |||| || | |||||||||||||||||||||| || ||||||| |
|
|
| T |
23446854 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaaaaagaaataaa |
23446926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 359 - 585
Target Start/End: Original strand, 23453820 - 23454043
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23453820 |
ttgtacctgaactccatcccagagctttttaagcttgctatgacccatgtgaagctctatgagcatttcagcacaaaaggttggtggcaaagactcaagg |
23453919 |
T |
|
| Q |
459 |
caatatccatcccattgaaggtacctcaatttatcagaaagacactcgagaccgtcaggtaagtgtacattgcatatgctcccgttggatatattataat |
558 |
Q |
| |
|
|| ||||| ||||| |||| |||||||||||| |||||| ||||| |||||||| || ||||| ||||||||| | ||||| || ||||||||||| |
|
|
| T |
23453920 |
cagtatccctcccacataaggaacctcaatttattagaaagccactcaagaccgtcgggaaagtgcacattgcatgttctcccattagatatattatag- |
23454018 |
T |
|
| Q |
559 |
aaatatcaagatatcttaagtttgtca |
585 |
Q |
| |
|
|| | |||||||||||||||||||| |
|
|
| T |
23454019 |
--attttaagatatcttaagtttgtca |
23454043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 23453434 - 23453702
Alignment:
| Q |
13 |
tgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaatt |
112 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
23453434 |
tgaacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaaga |
23453533 |
T |
|
| Q |
113 |
cgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatct |
212 |
Q |
| |
|
||||||| | |||||||| |||||||| |||| ||||||||||||| || | | |||| | |||||||||| || |||||||||| ||||||| |
|
|
| T |
23453534 |
tcagggagacagaagatggaaggatggagctgacacaggctttcacat----tgaaaaacactccatgaagatttgtatccttagataagtctgggatct |
23453629 |
T |
|
| Q |
213 |
caatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaacatg |
285 |
Q |
| |
|
||||||||||||||||||| | |||| | | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23453630 |
caatcagatctttggaggattcaagccggagtatgtttagattcacaagattctgtaacaataaataaacatg |
23453702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 359 - 533
Target Start/End: Original strand, 23478350 - 23478524
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
458 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23478350 |
ttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaaggttgatggcaaaaactcaaga |
23478449 |
T |
|
| Q |
459 |
caatatccatcccattgaaggtacctcaatttatcagaaagacactcgagaccgtcaggtaagtgtacattgcat |
533 |
Q |
| |
|
|| ||||| |||||| |||| ||||||||||||||||||| ||||| ||||| || || |||| ||||||||| |
|
|
| T |
23478450 |
cagtatccttcccatcgaagatacctcaatttatcagaaatccactcaagaccatcgggaaagtacacattgcat |
23478524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 359 - 532
Target Start/End: Original strand, 23447050 - 23447223
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
458 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23447050 |
ttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaaggttgatggcaaatactcaaga |
23447149 |
T |
|
| Q |
459 |
caatatccatcccattgaaggtacctcaatttatcagaaagacactcgagaccgtcaggtaagtgtacattgca |
532 |
Q |
| |
|
|| ||||| |||||| |||| ||||||||||||||||||| ||||| ||||| || || |||| |||||||| |
|
|
| T |
23447150 |
cagtatccttcccatcgaagatacctcaatttatcagaaatccactcaagaccatcgggaaagtacacattgca |
23447223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 359 - 511
Target Start/End: Original strand, 23498829 - 23498981
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
458 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23498829 |
ttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaaggttgatggcaaatactcaaga |
23498928 |
T |
|
| Q |
459 |
caatatccatcccattgaaggtacctcaatttatcagaaagacactcgagacc |
511 |
Q |
| |
|
|| ||||| |||||| |||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
23498929 |
cagtatccttcccatcgaagatacctcaatttatcagaaatccactcaagacc |
23498981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 359 - 541
Target Start/End: Original strand, 23463041 - 23463223
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23463041 |
ttgtacctgaactccatcccagagctttttaagcttgctatgactcatgcaaagatatacaagcatttcagcacaaaaggttgatggcaaagactcaaga |
23463140 |
T |
|
| Q |
459 |
caatatccatcccattgaaggtacctcaatttatcagaaagacactcgagaccgtcaggtaagtgtacattgcatatgctccc |
541 |
Q |
| |
|
|| |||| ||||| |||| ||||||||||||||||||| ||||| ||||||||||| |||| ||||||| | ||||||| |
|
|
| T |
23463141 |
cagtatcttacccatagaagatacctcaatttatcagaaatccactcaagaccgtcaggaaagtacacattgcctgtgctccc |
23463223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 419 - 556
Target Start/End: Original strand, 23468359 - 23468496
Alignment:
| Q |
419 |
aagcatttcagcacaaaaggttgatggcaaagactcaagacaatatccatcccattgaaggtacctcaatttatcagaaagacactcgagaccgtcaggt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||| || || |
|
|
| T |
23468359 |
aagcatttcagcacaaaaggttgatggcaaagattcaagacagtatccatcccatcgaaggtacctcaatttatcagaaatccactcaagaccatcggga |
23468458 |
T |
|
| Q |
519 |
aagtgtacattgcatatgctcccgttggatatattata |
556 |
Q |
| |
|
|||| ||||||||| ||||||| | ||||||||||| |
|
|
| T |
23468459 |
aagtacacattgcatgtgctcccatcagatatattata |
23468496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 496
Target Start/End: Original strand, 36002287 - 36002424
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
458 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| ||||||| |||||| ||| | | ||| |||||||||| ||| ||| ||||||||| | ||| |
|
|
| T |
36002287 |
ttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaagaattaagt |
36002386 |
T |
|
| Q |
459 |
caatatccatcccattgaaggtacctcaatttatcaga |
496 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||| |
|
|
| T |
36002387 |
gggaatgattcccatttaaggtacctcaatttatcaga |
36002424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 362 - 585
Target Start/End: Original strand, 11205 - 11428
Alignment:
| Q |
362 |
tacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaagacaa |
461 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| || |||||||| | ||||||| |||| |||||||||||||||||||||||||| | |
|
|
| T |
11205 |
tacctgaactccttcccagagctttttaagcttgctatgacgcaattgaagctctacgagcattttagcagaaaaggttgatggcaaagactcaagagag |
11304 |
T |
|
| Q |
462 |
tatccatcccattgaaggtacctcaatttatcagaaagacactcgagaccgtcaggtaagt---gtacattgcatatgctcccgttggatatattataat |
558 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| || |||| |||| || |
|
|
| T |
11305 |
tatctttcccaatgaaggtacctcaatttatcagaaagccactcgagaccgtcagggaagtgcagtacattgcatatgctcctgtaggatgtatt---at |
11401 |
T |
|
| Q |
559 |
aaatatcaagatatcttaagtttgtca |
585 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
11402 |
taatctcaagatatcttaagtttgtca |
11428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 10824 - 11125
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
||||||||||||||| ||||| ||| ||| ||||||||||||||||| | || |||||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
10824 |
gagatgaacaaccattgagtaaaagtacacggagagattttgaatgaatctcggctttaaggctttcaatatttatgcaacctcgtaaatctagataatc |
10923 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| |||||||||||||| |||||||| |||||| ||||||||||||| |||| || |||||||| |||| ||||||||||||||| |||||||| | | |
|
|
| T |
10924 |
aagtcgagggagagaaaggatggatgtatggagctgacgcaggcttttacattgagtgagatatagactttgaagatttgtagccctggataagtctgag |
11023 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaa |
308 |
Q |
| |
|
| |||||| |||||||| ||| ||||| || | ||||||||||||||| |||||| || ||||||||| |||||||| ||||||||||||||| |
|
|
| T |
11024 |
agctcaatgagatctttagagtttggaagcgaaagaactgttagattcacaagatcctgtaacaagaaataaacaagcatgagtgttgattaaaagagaa |
11123 |
T |
|
| Q |
309 |
ac |
310 |
Q |
| |
|
|| |
|
|
| T |
11124 |
ac |
11125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 496
Target Start/End: Original strand, 16121426 - 16121563
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
458 |
Q |
| |
|
||||||||||| || |||||| |||||| ||||||||||||| |||||| ||| || | |||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
16121426 |
ttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttctacaagcttttgaggacaaaaggttgatggcaaagactcaagt |
16121525 |
T |
|
| Q |
459 |
caatatccatcccattgaaggtacctcaatttatcaga |
496 |
Q |
| |
|
| || ||||| |||||||| |||||||||||||| |
|
|
| T |
16121526 |
ggaaatgattcccaatgaaggtagctcaatttatcaga |
16121563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 16337742 - 16337605
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
458 |
Q |
| |
|
||||||||||| || |||||| |||||| ||||||||||||| |||||| ||| | | ||| ||| |||||||||||||||||||||||| ||||| |
|
|
| T |
16337742 |
ttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttgtacaaggttttgagcacaaaaggttgatggcaaagattcaagt |
16337643 |
T |
|
| Q |
459 |
caatatccatcccattgaaggtacctcaatttatcaga |
496 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||| |
|
|
| T |
16337642 |
ggaaatgattcccaatgaaggtacctcaatttatcaga |
16337605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 360 - 457
Target Start/End: Complemental strand, 12897241 - 12897144
Alignment:
| Q |
360 |
tgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaag |
457 |
Q |
| |
|
|||||||||| | ||| ||| |||||||||||||||||||| |||| ||| | | |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
12897241 |
tgtacctgaatttcattccaaagctttttaagcttgctatggcgcatgctaagttgtacaagccattcggcacaaaaggttgatggcaaagactcaag |
12897144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 12897603 - 12897546
Alignment:
| Q |
41 |
agagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaat |
98 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||| |||||||| |||||||| |||||| |
|
|
| T |
12897603 |
agagattttgaatgaatgttagttttcaggctttcaatctttttgcaaccttttaaat |
12897546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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