View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10977_low_1 (Length: 830)
Name: NF10977_low_1
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_1 |
 | |
|
| [»] scaffold0201 (3 HSPs) |
| | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-163; HSPs: 32)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 32 - 438
Target Start/End: Original strand, 23351374 - 23351778
Alignment:
| Q |
32 |
agttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaattcgagggagagaaaagatgg |
131 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
23351374 |
agtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaatataagtcgagggagagaaaagatgg |
23351473 |
T |
|
| Q |
132 |
atggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatctcaatcagatctttggagga |
231 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23351474 |
atggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtctgggatctcaatcagatctttggagga |
23351573 |
T |
|
| Q |
232 |
ctgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaaacaaaacctagctctactgcaat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23351574 |
ttgaagcataattgatcttagattcacaagattctgtaataagaaataaacatgcatgagttttgattaaaagagaaacaaaacctagctctactgcaat |
23351673 |
T |
|
| Q |
332 |
tttgagaataacattagatcattcctcttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagca |
431 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| | ||||||||||||| |
|
|
| T |
23351674 |
tttgtgaatagcattaga--cttcctcttgtacctgaactccatcccagagctttttaagcttgcaatgagtcatgtgaagctcaataagcatttcagca |
23351771 |
T |
|
| Q |
432 |
caaaagg |
438 |
Q |
| |
|
||||||| |
|
|
| T |
23351772 |
caaaagg |
23351778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 442 - 813
Target Start/End: Original strand, 23464223 - 23464594
Alignment:
| Q |
442 |
ttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttgattcatcc |
541 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||| |
|
|
| T |
23464223 |
ttctatgtaggatgcatcgggatgaattttttcttcctctaacaatgaagacaaaagtttattgtgtagaccattgactccatacttgtttgattcatcc |
23464322 |
T |
|
| Q |
542 |
attacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgccccatattc |
641 |
Q |
| |
|
||||||| | |||||||| | |||| ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23464323 |
attacatagtggaagcaaagaacttcaaattgggaataaagtttaccaaataaagtcctagcaatggtggtctttcctatgccacccatgccccatattc |
23464422 |
T |
|
| Q |
642 |
caatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatatgggtatct |
741 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
23464423 |
caatgattataacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagcccattaatatcatatgggtatct |
23464522 |
T |
|
| Q |
742 |
aagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaag |
813 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23464523 |
aggattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaag |
23464594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 447 - 813
Target Start/End: Original strand, 23405597 - 23405963
Alignment:
| Q |
447 |
tgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttgattcatccattac |
546 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||||||||| |
|
|
| T |
23405597 |
tgtaggatgcatcgggatgaattttttcttcctctaacaatgaagacaaaagtttattgtgtagaccattgactccatacttgtttgattcatccattac |
23405696 |
T |
|
| Q |
547 |
attgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgccccatattccaatg |
646 |
Q |
| |
|
|| | |||||||| | |||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23405697 |
atagtggaagcaaagaacttcaaattgggaataaagtttaccaaataaagtcctagcaatggtggtctttcctatgccacccatgccccatattccaatg |
23405796 |
T |
|
| Q |
647 |
actctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatatgggtatctaagat |
746 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |
|
|
| T |
23405797 |
attttaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccctttaatgtcatatgggtatctaggat |
23405896 |
T |
|
| Q |
747 |
tcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaag |
813 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23405897 |
tcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaag |
23405963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 434 - 813
Target Start/End: Original strand, 23448228 - 23448607
Alignment:
| Q |
434 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
533 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
23448228 |
aaaggggcttctatgtaggatgcatcaggatgaatattttcttcctctaacaatgaagacagaagtttattgtgtagaacattgagtccatacttgtttg |
23448327 |
T |
|
| Q |
534 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
633 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||||| ||||| || ||||| ||||||| ||| ||| || ||||||||||||||| ||||||||||| |
|
|
| T |
23448328 |
attcatccattacattgaggacgcaacgaccttcgaattgggaaaaatgtttagcatataatgtcttagcaagggtggtctttcctatcccacccatgcc |
23448427 |
T |
|
| Q |
634 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
733 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23448428 |
ccatattccaagtactctgacttcatttgacccaattttcagcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
23448527 |
T |
|
| Q |
734 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaag |
813 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23448528 |
gggtacctaatattcagtttccgcaaaacatcttcaacaatgtctttaatgaagtctggttcactcctaacatatgaaag |
23448607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 434 - 789
Target Start/End: Original strand, 23454993 - 23455348
Alignment:
| Q |
434 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
533 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
23454993 |
aaagggacttctatgtagggtgcatcaggatgaagattttcttcctataacaatgaagataaaagtttattgtatacaacattgagtccatacttgtttg |
23455092 |
T |
|
| Q |
534 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
633 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||| ||| || ||| ||||||||||||||||||||||| |
|
|
| T |
23455093 |
attcatccattacattgaggaagcaacgaccttcgaattgggaataaagtttagcatataaagtcttagcaagggttgtctttcctatgccacccatgcc |
23455192 |
T |
|
| Q |
634 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
733 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23455193 |
ccatattccaaggactttaacatcatttgacccaattttcagcattgattcaatttgtttataatttttctcaattccaacaagacccttaatttcatat |
23455292 |
T |
|
| Q |
734 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtc |
789 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
23455293 |
gggtatctaagatttagtttccttaaaacatcttcaacaatgtccttaatgaagtc |
23455348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 434 - 813
Target Start/End: Original strand, 23499996 - 23500375
Alignment:
| Q |
434 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
533 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||| |
|
|
| T |
23499996 |
aaaggggcttctatgtaggatgcatcaggatgaatattttcttcctctaacaatgaagacaaaagtttattgagtacaacattaagtccatacttgtttg |
23500095 |
T |
|
| Q |
534 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
633 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| | ||||| | |||| ||||||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
23500096 |
attcatccattacattgagtaagcaacaaccttcgaattgagaatacattttagcatataaagccctagcaagggtggtctttcctatgccacccatgcc |
23500195 |
T |
|
| Q |
634 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
733 |
Q |
| |
|
||||||||||| |||||| || |||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
23500196 |
ccatattccaaggactctgacttcatgtgacccaattttcagcattgattcaatttgtttataattcttctcaattccaacaagacccttaatttcatat |
23500295 |
T |
|
| Q |
734 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaag |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||| ||||| |
|
|
| T |
23500296 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatgtccttaatgaaatctggttcactcctaacataggaaag |
23500375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 442 - 802
Target Start/End: Original strand, 23352883 - 23353243
Alignment:
| Q |
442 |
ttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttgattcatcc |
541 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| | | |||||| |||||||||||||||||||||| |
|
|
| T |
23352883 |
ttctatgtaggatgcatcaggatgaagattttcttcctctaacaatgaagaaaaaaatttattgtgtagaccattgactccatacttgtttgattcatcc |
23352982 |
T |
|
| Q |
542 |
attacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgccccatattc |
641 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23352983 |
attacattgaggaagcaacgaccttcgaattgggaataaagtttagcatataaagtcctagcaagggtggtctttcctatgccacccatgccccatattc |
23353082 |
T |
|
| Q |
642 |
caatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatatgggtatct |
741 |
Q |
| |
|
||| || || ||||||||||||| |||||| || |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23353083 |
caaggattccaacatcatttgactcaattttcagtattgattcaatttggtcataatttttctcaactccaacaagccccttaatttcatatgggtatct |
23353182 |
T |
|
| Q |
742 |
aagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactccta |
802 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| | ||||| ||||| || ||| ||||| |
|
|
| T |
23353183 |
aagatttagtttctgcaaaacatcttcaacaatgtccttaataaagtccgattcaatccta |
23353243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 23385689 - 23386118
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
23385689 |
gagatgaacaaccattgagtaaaagtacacagagagattttgaatgaatgttggatttaaggctttcaatctttatgcaacctcttaaatctagatatat |
23385788 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||| ||||||||| |||||||||||||||| ||| |
|
|
| T |
23385789 |
aattcgagggagagaaaagatggatggatggagctgacgcaggctttcacattccgagagatgtattctgtcaagatttatagccctagataagtctggg |
23385888 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaa |
308 |
Q |
| |
|
||||||||||||||||||||||| | |||| || | |||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
23385889 |
atctcaatcagatctttggaggattcaagccaaagtactcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
23385988 |
T |
|
| Q |
309 |
acaaaa-------------cctagctctactgcaattttgagaataacattagatcattcctcttgtacctgaactccatcccagagctttttaagcttg |
395 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23385989 |
acaaaacctagttaaacatcctagctctgctgcaattttgtgaaaaacat-------------ttgtacctgaactccatcccagagctttttaagcttg |
23386075 |
T |
|
| Q |
396 |
ctttgatccatggaaagctctacaagcatttcagcacaaaagg |
438 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
23386076 |
ctttgattcatgcaaagctctacaagcatttcagcacaaaagg |
23386118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 434 - 792
Target Start/End: Original strand, 23387210 - 23387568
Alignment:
| Q |
434 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
533 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| ||| |||| |
|
|
| T |
23387210 |
aaaggggattctatgtaggatgcataaggatgaagattttcttcctctaacaatgaagacagaagtttattgtataaaacatcgagtccatgcttttttg |
23387309 |
T |
|
| Q |
534 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
633 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
23387310 |
attcatccattacattgaggaagcaacgaccttcaaattgggaataaagtttaccatataaagtcttagcaagggtggtctttcctatgccacccatgcc |
23387409 |
T |
|
| Q |
634 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
733 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||| || |||||| ||||| || || ||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
23387410 |
ccatattccaaggactctgacatcatttgaccaaattttcagcattgaatcaatctgctcataagttttctcaattccaacaatccccttaatttcatat |
23387509 |
T |
|
| Q |
734 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctga |
792 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||| |||||| | |||||||||||||| |
|
|
| T |
23387510 |
gggtatctaagattcagcttctgcaagacatctttgacaatgtccttaatgaagtctga |
23387568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 434 - 813
Target Start/End: Original strand, 23479517 - 23479899
Alignment:
| Q |
434 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
533 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||| |
|
|
| T |
23479517 |
aaaggggcttctatgtaggatgcatcaggatgaatattttcttcctctaacaatgaagacaaaagtttattgagtacaacattaagtccatacttgtttg |
23479616 |
T |
|
| Q |
534 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
633 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| | ||||| | |||| ||||||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
23479617 |
attcatccattacattgagtaagcaacaaccttcgaattgagaatacattttagcatataaagccctagcaagggtggtctttcctatgccacccatgcc |
23479716 |
T |
|
| Q |
634 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagcc---ccttaatttca |
730 |
Q |
| |
|
||||||||||| |||||| || |||| ||||||||||| || | ||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23479717 |
ccatattccaaggactctgacttcatgtgacccaattttcagctttgattcaatttggtcataatttttctcaattccaacaagcccggccttaatttca |
23479816 |
T |
|
| Q |
731 |
tatgggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaag |
813 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| || | ||||||||| ||| ||| ||||| |||| ||||| |
|
|
| T |
23479817 |
tatgggtatttaagattcagtttctgcaaaacatcttcaacgatatccttaatgaagcgtgattcagtcctagcatacgaaag |
23479899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 434 - 789
Target Start/End: Original strand, 23440849 - 23441204
Alignment:
| Q |
434 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
533 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
23440849 |
aaagtggcttctatgtaggatgcatcaggatgaatattttcctcctctaacaatgaggataaaagtttattgtatacaacattatgtccatacctgtttg |
23440948 |
T |
|
| Q |
534 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
633 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||| ||| | ||||||| | || ||||| ||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
23440949 |
attcatcaattacattgagaaagcaacaaccttcaaattgagaataaattatagcatatgaagccctagcaagagtggtctttcctatgccacccatgcc |
23441048 |
T |
|
| Q |
634 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
733 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| || ||||| |||||||| || ||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
23441049 |
ccatattccaaggactctaacatcatttgagccaattttcagtattgactcaatttggtcataatttttctcaactccaacaagccccttaatttcacat |
23441148 |
T |
|
| Q |
734 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtc |
789 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||| | ||||||||||| |
|
|
| T |
23441149 |
gggtatctaagattcagtttccgcaaaacatttttaacaatgtccttaatgaagtc |
23441204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 434 - 789
Target Start/End: Original strand, 23473381 - 23473736
Alignment:
| Q |
434 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
533 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
23473381 |
aaagtggcttctatgtaggatgcatcaggatgaatattttcctcctctaacaatgaggataaaagtttattgtatacaacattatgtccatacctgtttg |
23473480 |
T |
|
| Q |
534 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
633 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| ||| | ||||||| | || ||||| ||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
23473481 |
attcatccattacattgagaaagcaacaaccttcaaattgagaataaattatagcatatgaagccctagcaagagtggtctttcctatgccacccatgcc |
23473580 |
T |
|
| Q |
634 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
733 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| || ||||| |||||||| || ||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
23473581 |
ccatattccaaggactctaacatcatttgagccaattttcagtattgactcaatttggtcataatttttctcaactccaacaagccccttaatttcacat |
23473680 |
T |
|
| Q |
734 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtc |
789 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||| | ||||||||||| |
|
|
| T |
23473681 |
gggtaactaagattcagtttccgcaaaacatatttaacaatgtccttaatgaagtc |
23473736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 436
Target Start/End: Original strand, 23404060 - 23404487
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
23404060 |
gagatgaacaaccattgagtaagagttgacaaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatattg |
23404159 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| | ||||||||||||||||||||||||| ||| |
|
|
| T |
23404160 |
aagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaatagcaagatttgtagccctagataagtctggg |
23404259 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaa |
308 |
Q |
| |
|
||||||||||||||||||||||| | |||| || || |||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
23404260 |
atctcaatcagatctttggaggattcaagccaaagtgttcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
23404359 |
T |
|
| Q |
309 |
acaaaa-------------cctagctctactgcaattttgagaataacattagatcattcctcttgtacctgaactccatcccagagctttttaagcttg |
395 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23404360 |
acaaaacctagttaaacatcctagctctgctgcaattttgtgaaaaacat-------------ttgtacctgaactccatcccagagctttttaagcttg |
23404446 |
T |
|
| Q |
396 |
ctttgatccatggaaagctctacaagcatttcagcacaaaa |
436 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
23404447 |
ctttgagccatgcaaagctctacaagcatttcagcacaaaa |
23404487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 23439253 - 23439564
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||| |||| | |||||||||| |||||||||| |||| |
|
|
| T |
23439253 |
gagatgaacaaccatccagtaagagttcacgaagagattttgaatgaatgttcgttttaaggctttcaatagtaatgcaacctcctaaatctagaaatgt |
23439352 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||| || ||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
23439353 |
aagtcgagggagagaaaagatggatggatggagctgacgcaagctttcacattgacagagagatgctcttccaagatttgtagccctagataagtcgggg |
23439452 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttaga-ttcacaagattctgtaataataaataaacatgcatgagttttgattaaaagaga |
307 |
Q |
| |
|
||||||||||||||||||||| | | ||| |||| ||||| || |||||||||||||| || |||||||||||||| ||| |||||||||||||| |
|
|
| T |
23439453 |
atctcaatcagatctttggagtaattaaggcagattgtgattagattttacaagattctgtaacaagaaataaacatgcataagtgttgattaaaagaga |
23439552 |
T |
|
| Q |
308 |
aacaaaacctag |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23439553 |
aacaaaacctag |
23439564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 23462679 - 23462989
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||||||||||||| | |||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
23462679 |
gagatgaacaaccattgagtaagagttgacgaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatattg |
23462778 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||| ||| |
|
|
| T |
23462779 |
aagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaacaacaagatttgtagccctagataagtctggg |
23462878 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaa |
308 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
23462879 |
atctcaatcagatctttggaggatcgaagccaaagtgttcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
23462978 |
T |
|
| Q |
309 |
acaaaacctag |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
23462979 |
acaaaacctag |
23462989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 41 - 319
Target Start/End: Original strand, 23471821 - 23472099
Alignment:
| Q |
41 |
agagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaattcgagggagagaaaagatggatggatgga |
140 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| | |||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
23471821 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggagagaaaagatgtatggatgga |
23471920 |
T |
|
| Q |
141 |
gttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatctcaatcagatctttggaggactgaagcat |
240 |
Q |
| |
|
| |||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||| | |
|
|
| T |
23471921 |
gatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggct |
23472020 |
T |
|
| Q |
241 |
aattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaaacaaaacctag |
319 |
Q |
| |
|
|| || |||||||||||||||||||||| || |||||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
23472021 |
aaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagagaaacaaaacctag |
23472099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 23498403 - 23498675
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| | |
|
|
| T |
23498403 |
gagaagaacaaccatcgagtaagagttcacaaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatct |
23498502 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| ||||||||||||||| || | |||||| |||| ||||||||||||| || ||||||||||| | ||||||||||||| |||||||||| ||| |
|
|
| T |
23498503 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctggg |
23498602 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaa |
281 |
Q |
| |
|
||||||||||||| ||||||||| | |||| || | |||||||||||||||||||||| || ||||||| |
|
|
| T |
23498603 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
23498675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 23477960 - 23478226
Alignment:
| Q |
15 |
aacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaattcg |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
23477960 |
aacaaccatcaagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaagatc |
23478059 |
T |
|
| Q |
115 |
agggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatctca |
214 |
Q |
| |
|
||||||||||||||| || | |||||| |||| ||||||||||||| || ||||||||||| | ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
23478060 |
agggagagaaaagatagaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctgggatctca |
23478159 |
T |
|
| Q |
215 |
atcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaa |
281 |
Q |
| |
|
||||||| ||||||||| | |||| || | |||||||||||||||||||||| || ||||||| |
|
|
| T |
23478160 |
atcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
23478226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 23446654 - 23446926
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||| ||| ||||||||||||| | |
|
|
| T |
23446654 |
gagatgcacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcagtctcgtaaatctagatatct |
23446753 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| |||||||||||||||||| |||||||| |||| ||||||||||||| || ||||||||||| | ||||||||||||| |||||||||| ||| |
|
|
| T |
23446754 |
aagatcagggagagaaaagatggaaggatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctggg |
23446853 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaa |
281 |
Q |
| |
|
||||||||||||| ||||||||| | |||| || | |||||||||||||||||||||| || ||||||| |
|
|
| T |
23446854 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaaaaagaaataaa |
23446926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 23453434 - 23453702
Alignment:
| Q |
13 |
tgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaatt |
112 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
23453434 |
tgaacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaaga |
23453533 |
T |
|
| Q |
113 |
cgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatct |
212 |
Q |
| |
|
||||||| | |||||||| |||||||| |||| ||||||||||||| || | | |||| | |||||||||| || |||||||||| ||||||| |
|
|
| T |
23453534 |
tcagggagacagaagatggaaggatggagctgacacaggctttcacat----tgaaaaacactccatgaagatttgtatccttagataagtctgggatct |
23453629 |
T |
|
| Q |
213 |
caatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaacatg |
285 |
Q |
| |
|
||||||||||||||||||| | |||| | | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23453630 |
caatcagatctttggaggattcaagccggagtatgtttagattcacaagattctgtaacaataaataaacatg |
23453702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 666 - 792
Target Start/End: Original strand, 21087588 - 21087714
Alignment:
| Q |
666 |
caatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatatgggtatctaagattcagtttccgcaaaacatc |
765 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
21087588 |
caatttccagtattggttcaaattgttcgtaatttttctcaactccaacaagccccttaatttcatattgccatctaagattcagtttctgcaaaacatc |
21087687 |
T |
|
| Q |
766 |
ttcaacaatggctttaatgaagtctga |
792 |
Q |
| |
|
||| |||||| ||||||||||||| |
|
|
| T |
21087688 |
ttcgacaatgttcataatgaagtctga |
21087714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 23472205 - 23472283
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaag |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
23472205 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaag |
23472283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 359 - 438
Target Start/End: Original strand, 23453820 - 23453899
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
23453820 |
ttgtacctgaactccatcccagagctttttaagcttgctatgacccatgtgaagctctatgagcatttcagcacaaaagg |
23453899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 359 - 438
Target Start/End: Original strand, 23463041 - 23463120
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| |||| | ||||||||||||||||||||||| |
|
|
| T |
23463041 |
ttgtacctgaactccatcccagagctttttaagcttgctatgactcatgcaaagatatacaagcatttcagcacaaaagg |
23463120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 23439670 - 23439748
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaag |
437 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
23439670 |
ttgtacctgaactccatctcagagatttttaagcttgctatgagtcatgctaagctctacaagcatttcagcacaaaag |
23439748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 608 - 811
Target Start/End: Original strand, 36003639 - 36003845
Alignment:
| Q |
608 |
gtggtctttcctatgccacccatgccccatattccaa-tgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctca |
706 |
Q |
| |
|
|||||||||||||| || ||||| ||||||| ||||| ||| |||||||||||||||| ||||| || | ||||||| | | ||| || ||||||||| |
|
|
| T |
36003639 |
gtggtctttcctataccgcccattccccataatccaagtga-tctaacatcatttgacaaaattttcagtaatgattcagtctcttcatactttttctca |
36003737 |
T |
|
| Q |
707 |
attccaacaa---gccccttaatttcatatgggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaa |
803 |
Q |
| |
|
|||||||||| || |||| |||| |||||||||| |||||| ||| ||||||||||||||||||| | |||||||| | ||| ||| ||||| |
|
|
| T |
36003738 |
attccaacaagttgcatattaacttcaaatgggtatctccgattcaattttttcaaaacatcttcaacaatgtccttaatgaaatttgattcaatcctac |
36003837 |
T |
|
| Q |
804 |
catatgaa |
811 |
Q |
| |
|
|||||||| |
|
|
| T |
36003838 |
catatgaa |
36003845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 359 - 438
Target Start/End: Original strand, 23447050 - 23447129
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
438 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| || | |||||||| ||||||||||||||||||| |
|
|
| T |
23447050 |
ttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaagg |
23447129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 359 - 438
Target Start/End: Original strand, 23478350 - 23478429
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
438 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| || | |||||||| ||||||||||||||||||| |
|
|
| T |
23478350 |
ttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaagg |
23478429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 359 - 438
Target Start/End: Original strand, 23498829 - 23498908
Alignment:
| Q |
359 |
ttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
438 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| || | |||||||| ||||||||||||||||||| |
|
|
| T |
23498829 |
ttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaagg |
23498908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 608 - 671
Target Start/End: Original strand, 36024736 - 36024799
Alignment:
| Q |
608 |
gtggtctttcctatgccacccatgccccatattccaatgactctaacatcatttgacccaattt |
671 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| | | |||||||||||||||||||||||| |
|
|
| T |
36024736 |
gtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattt |
36024799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 677 - 767
Target Start/End: Original strand, 21086975 - 21087065
Alignment:
| Q |
677 |
attgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatatgggtatctaagattcagtttccgcaaaacatctt |
767 |
Q |
| |
|
|||||||||||||||| || | ||||| ||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||| |
|
|
| T |
21086975 |
attgattcaatttgtttacaactgttctctattccaacaagccccttaatttcatattggggtctaaagttcagtttctgcaaaacatctt |
21087065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 607 - 645
Target Start/End: Complemental strand, 35768362 - 35768324
Alignment:
| Q |
607 |
ggtggtctttcctatgccacccatgccccatattccaat |
645 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
35768362 |
ggtggtcttccctatgccacccatgccccatatcccaat |
35768324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 448 - 813
Target Start/End: Original strand, 12393 - 12761
Alignment:
| Q |
448 |
gtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttgattcatccattaca |
547 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| | |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
12393 |
gtaggatgcatcaggatgaagattttcttcctctaacaatgaagaaaaaagtttactgtgtataacattgagtccatacttgtttgattcatcccttaca |
12492 |
T |
|
| Q |
548 |
ttgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgccccatattccaatga |
647 |
Q |
| |
|
|| ||||| ||| |||||| ||| ||||||||||||| |||||||||| || | || |||||| |||| |||||||||||||||||||||||||| || |
|
|
| T |
12493 |
ttaaggaaacaaccgccttcaaattgggaataaagttttgcatataaagtactcgcaagggtggtttttcgtatgccacccatgccccatattccaagga |
12592 |
T |
|
| Q |
648 |
ctctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagcc---ccttaatttcatatgggtatctaag |
744 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||||||||| || ||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
12593 |
ctctaacatcatttgacccaattttaaactttgattcaatttggtcataatttttctcaactccaacaagcccggccttaatttcatatgggtatttaag |
12692 |
T |
|
| Q |
745 |
attcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaag |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| ||| ||| ||||| |||| ||||| |
|
|
| T |
12693 |
attcagtttccgcaaaacatcttcaacaatatccttaatgaagcgtgattcagtcctagcatacgaaag |
12761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 10824 - 11125
Alignment:
| Q |
9 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
108 |
Q |
| |
|
||||||||||||||| ||||| ||| ||| ||||||||||||||||| | || |||||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
10824 |
gagatgaacaaccattgagtaaaagtacacggagagattttgaatgaatctcggctttaaggctttcaatatttatgcaacctcgtaaatctagataatc |
10923 |
T |
|
| Q |
109 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
208 |
Q |
| |
|
|| |||||||||||||| |||||||| |||||| ||||||||||||| |||| || |||||||| |||| ||||||||||||||| |||||||| | | |
|
|
| T |
10924 |
aagtcgagggagagaaaggatggatgtatggagctgacgcaggcttttacattgagtgagatatagactttgaagatttgtagccctggataagtctgag |
11023 |
T |
|
| Q |
209 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagagaa |
308 |
Q |
| |
|
| |||||| |||||||| ||| ||||| || | ||||||||||||||| |||||| || ||||||||| |||||||| ||||||||||||||| |
|
|
| T |
11024 |
agctcaatgagatctttagagtttggaagcgaaagaactgttagattcacaagatcctgtaacaagaaataaacaagcatgagtgttgattaaaagagaa |
11123 |
T |
|
| Q |
309 |
ac |
310 |
Q |
| |
|
|| |
|
|
| T |
11124 |
ac |
11125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 11205 - 11281
Alignment:
| Q |
362 |
tacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
438 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||| || ||||||||| ||||||| |||| |||||| |
|
|
| T |
11205 |
tacctgaactccttcccagagctttttaagcttgctatgacgcaattgaagctctacgagcattttagcagaaaagg |
11281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 520 - 813
Target Start/End: Complemental strand, 10792 - 10499
Alignment:
| Q |
520 |
tccatacttgtttgattcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcct |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||| | |||| ||||||||| ||||| || ||||||||||||| |
|
|
| T |
10792 |
tccatacttgtttgattcatccattacattgagtaagcaacaaccttcgaattgagaatacattttagcatataaagccctagcaagggtggtctttcct |
10693 |
T |
|
| Q |
620 |
atgccacccatgccccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagcc |
719 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || |||| ||||||||||| || ||||||||||||||||| ||||| |||| |||||||||||| | |
|
|
| T |
10692 |
atgccacccatgccccatattccaaggactctgacttcatgtgacccaattttcagcattgattcaatttgtttataattcttctgaattccaacaagac |
10593 |
T |
|
| Q |
720 |
ccttaatttcatatgggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaag |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||| ||||| |
|
|
| T |
10592 |
ccttaatttcatatgggtatctaagattcagtttccgcaaaacatcttcaacaatgtccttaatgaaatctggttcactcctaacataggaaag |
10499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 610 - 811
Target Start/End: Original strand, 16122856 - 16123060
Alignment:
| Q |
610 |
ggtctttcctatgccacccatgccccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaatt |
709 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| | | | | | ||||||| | ||| || ||||| |||||| |
|
|
| T |
16122856 |
ggtctttcctatgccccccatgccccataatccaagcgttctaacatcatttgacccattattcgttaacaattcaatctcttcatattttttttcaatt |
16122955 |
T |
|
| Q |
710 |
ccaacaagccccttaat---ttcatatgggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacat |
806 |
Q |
| |
|
|||||||| ||||| | |||| |||| ||| |||||||||| ||||||||||| ||| ||| | |||||||||||||| ||| ||||||||| |
|
|
| T |
16122956 |
ccaacaagttccttattggcttcaactgggcgtctctgattcagtttttccaaaacatctttaacgatgtccttaatgaagtctgattcaatcctaacat |
16123055 |
T |
|
| Q |
807 |
atgaa |
811 |
Q |
| |
|
||||| |
|
|
| T |
16123056 |
atgaa |
16123060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 667
Target Start/End: Complemental strand, 16336344 - 16336287
Alignment:
| Q |
610 |
ggtctttcctatgccacccatgccccatattccaatgactctaacatcatttgaccca |
667 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
16336344 |
ggtctttcctatgccccccatgccccataatccaagcgttctaacatcatttgaccca |
16336287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 717
Target Start/End: Complemental strand, 12895868 - 12895759
Alignment:
| Q |
608 |
gtggtctttcctatgccacccatgccccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaa |
707 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||| | | ||||||||||||||||||||| ||| | ||||||| | ||| | ||||| |||| |
|
|
| T |
12895868 |
gtggtctttcctatgccgcccatgccccaaaacccaagggttttaacatcatttgacccaattttcattaacgattcaacctcttcacactttttatcaa |
12895769 |
T |
|
| Q |
708 |
ttccaacaag |
717 |
Q |
| |
|
|||||||||| |
|
|
| T |
12895768 |
ttccaacaag |
12895759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 12897603 - 12897546
Alignment:
| Q |
41 |
agagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaat |
98 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||| |||||||| |||||||| |||||| |
|
|
| T |
12897603 |
agagattttgaatgaatgttagttttcaggctttcaatctttttgcaaccttttaaat |
12897546 |
T |
|
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