View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_12 (Length: 508)
Name: NF10977_low_12
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_12 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 30415784 - 30415303
Alignment:
| Q |
18 |
catcagctggccatttaatgtgtgttcccaacaattgtttagggtcaagggtttggcaattagggttgcataa-----acgtctactcaataa--ataag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | | || ||||| ||||| |
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| T |
30415784 |
catcagctggccatttaatgtgtgttcccaacaattgtttagggtcaagggtttcgtaattagggttgcatgtctgctaggattaaataataagaataag |
30415685 |
T |
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| Q |
111 |
aataagaataaagataaagatgatacttcnnnnnnnaagtttagtcgctataccccaatagtatgaaaaagtttttcataaacgtctactcaaattttac |
210 |
Q |
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| T |
30415684 |
aataagaataaggataaagatgatactt-tttttttatgtttagtcgttataccccaatagtatgaaaaagtttttcataaatgtctactcaaattttat |
30415586 |
T |
|
| Q |
211 |
tatcaacagtgtgaattaattttgagatgtaatactacaacataacaataccgttaaatatgatttagcagatataccttttgaaacaggaatcgtgcca |
310 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30415585 |
tattaatagtgtgaattaattttgagatgtaatactacaacataacaataccgttaaatatgatttagcagatataccttttgaaacaggaatcgtgcca |
30415486 |
T |
|
| Q |
311 |
tgtcagtataatgttatacaaatatgagac--tgttatttatccactgagaatttctaattgcatctctattgtatcactaacattttacagcttagaat |
408 |
Q |
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| T |
30415485 |
tgtcaatataatgttatacaaatatgagactatgttatttatccactgagaatttctaattgcatctctattgtatcactaacattttacagcttagaat |
30415386 |
T |
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| Q |
409 |
catggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggtta |
491 |
Q |
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| T |
30415385 |
catggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggtta |
30415303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 322 - 491
Target Start/End: Complemental strand, 30432108 - 30431940
Alignment:
| Q |
322 |
tgttatacaaatatgagactgttatttatccactgagaatttctaattgcatctctatt-gtatcactaacattttacagcttagaatcatggacatttc |
420 |
Q |
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||||||||| |||||||||| || ||||||| |||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
30432108 |
tgttatacatatatgagactatt--ttatccattgagaaattctaactgcatctctatttgtatcactaacgttttacagcttagaatcatggacatttg |
30432011 |
T |
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| Q |
421 |
aaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggtta |
491 |
Q |
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| T |
30432010 |
aaataatggtgctcctttctggtgctcttcccaacccaaaattgcaaacttcagtcctttctatatggtta |
30431940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 395 - 491
Target Start/End: Complemental strand, 30380687 - 30380591
Alignment:
| Q |
395 |
ttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggtta |
491 |
Q |
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| T |
30380687 |
ttacagtttagaatcatggacatttgaactaatggtgcttctttctggtgctcttcccaatccaaaattgcaaacatcagtgctttctatatggtta |
30380591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 393 - 491
Target Start/End: Complemental strand, 30476824 - 30476726
Alignment:
| Q |
393 |
ttttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggtta |
491 |
Q |
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| T |
30476824 |
ttttacagcttagaatcttggatgtatgaaataatggttctcctctctggtactcttcctaatccaaaattgcaaacttcagtgcttgctatatggtta |
30476726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 475
Target Start/End: Complemental strand, 30372487 - 30372387
Alignment:
| Q |
375 |
tctattgtatcactaacattttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcag |
474 |
Q |
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| T |
30372487 |
tctattgtatcactaccatgtcatagtttagaatcatggaaatttcaattaatgctcctcctatctggtgctcttcccaatccaatattgcaaacatcag |
30372388 |
T |
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| Q |
475 |
t |
475 |
Q |
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| T |
30372387 |
t |
30372387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 30470455 - 30470359
Alignment:
| Q |
393 |
ttttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggt |
489 |
Q |
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| T |
30470455 |
ttttgcagcttagaatcatggatgtatgaaataatggtgctcctatccggtactcttcctaatccaaaattgcaaacatcggtactttctttatggt |
30470359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 77782 - 77815
Alignment:
| Q |
55 |
tttagggtcaagggtttggcaattagggttgcat |
88 |
Q |
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| T |
77782 |
tttagggtcaagggtttggcaattagggttgcat |
77815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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