View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_15 (Length: 393)
Name: NF10977_low_15
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 31102969 - 31103346
Alignment:
| Q |
1 |
ccatcaagacagtggagcctcttactaaggttgctttcttcatgaaattatatattgaaaaaataataatcagtgacaggtaacaactctctaccattta |
100 |
Q |
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| T |
31102969 |
ccatcaagacagtggagcctcttactaaggttgctttcttcatgaaattatatattgaaaaaataataatcagtgacaagtaacaactctctaccattta |
31103068 |
T |
|
| Q |
101 |
aactgagtattgtagcaattttcttatatgtgacaataacaattcttaatagaaaattcaataatgaaagagaagaaagtcaatttattccataagattg |
200 |
Q |
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| T |
31103069 |
aactgagtattgtagcaattttcttgtatgtgacaataacaattcttaatagaaaaatcaataatgaaagagaaaaaagtcaatttattccataagattg |
31103168 |
T |
|
| Q |
201 |
atcaatgattacaactcttttaaaacagttcttaacacaaagaattcaacacctctgctaattaacaacatcaactgtaataatatattctaggcaacta |
300 |
Q |
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| T |
31103169 |
atcaatgattacaactcttttcaaacagttcttaacacaaagaattcaacacctctgctaattaacaccatcaactgtaataatatattctaggcaacta |
31103268 |
T |
|
| Q |
301 |
ctttgacaatggagccatgcttggcacatactcgtaataccaaaaacaagcattctctaaagtatcgagttgaaattg |
378 |
Q |
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| T |
31103269 |
ctttgacaatggagccatgcttggcacatactcgtaataccaaaaacaagcattctctaaagtatcgagttgaaattg |
31103346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 38898465 - 38898774
Alignment:
| Q |
4 |
tcaagacagtggagcctcttactaaggttgctttcttcatgaaattatatattgaaaaaataataatcagtgacaggtaacaactctctaccatttaaac |
103 |
Q |
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| T |
38898465 |
tcaagacaatggagcctcttactaaggttgctttcttcatgaaattatat--tgagaaaataataatcagggacaagtaacatctttgttccatttaaac |
38898562 |
T |
|
| Q |
104 |
tgagtattgtagcaattttcttatatgtgacaataacaattcttaatagaaaattcaataatgaaagagaagaaagtcaatttattccataagattgatc |
203 |
Q |
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| T |
38898563 |
cgagtattgtagcatttttcttatatgtaataataacaattcttaatagaaaattcaataatgaaagagaaaaaagtcaatttattccataagattgatc |
38898662 |
T |
|
| Q |
204 |
aatgattacaactcttttaaaacagttct-------taacacaaagaattcaacacctctgctaattaacaacatcaactgtaataatatattctaggca |
296 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||| |
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| T |
38898663 |
aatgattacaactcttttcaaacagttctttctaaataacacaaagaattctacacctctgctaattaacaccagcaactgtaataatatatttcaggca |
38898762 |
T |
|
| Q |
297 |
actactttgaca |
308 |
Q |
| |
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||||||||||| |
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| T |
38898763 |
gctactttgaca |
38898774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 4 - 333
Target Start/End: Original strand, 31108563 - 31108902
Alignment:
| Q |
4 |
tcaagacagtggagcctct---tactaaggttgctttcttcatgaaattatatattgaaaaaataataatcagtgacag--gtaacaactctctaccatt |
98 |
Q |
| |
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|||||||||||||| |||| ||||| | | ||||||||||||||||||||| || | || | |||||| ||| | | ||||||||||| | ||||| |
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| T |
31108563 |
tcaagacagtggagtctctcactactaggatagctttcttcatgaaattatatcttaagaagacaataattagtaagaatagtaacaactctgttccatt |
31108662 |
T |
|
| Q |
99 |
taaactgagtattgtagcaattttcttatatgtgacaataacaattcttaatagaaaattcaataatgaaagagaagaaagtcaatttattccataagat |
198 |
Q |
| |
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||||||||||||||||||| ||||||| ||||||| |||||| |||||| |||||| ||||||||||| |||| ||||| ||||||||| |||||| |
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| T |
31108663 |
taaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacagaaaactcaataatgaa--agaaaaaagttgatttattccttaagat |
31108760 |
T |
|
| Q |
199 |
tgatcaatgattacaactcttttaaaacagttct-------taacacaaagaattcaacacctctgctaattaacaacatcaactgtaataatatattct |
291 |
Q |
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||||||||||| | ||||||||| |||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
31108761 |
tgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaaccaacacctctgctaattaacaccatcaactgtaataatatattgt |
31108860 |
T |
|
| Q |
292 |
aggcaactactttgacaatggagccatgcttggcacatactc |
333 |
Q |
| |
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||||| ||||||||||||| |||| ||||||||||||||||| |
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| T |
31108861 |
aggcagctactttgacaatagagctatgcttggcacatactc |
31108902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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