View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_17 (Length: 379)
Name: NF10977_low_17
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 10285885 - 10286055
Alignment:
| Q |
1 |
atgttatcaatggtgaagtctttggatattctgaaaacaccttcttctgtcaaaatcatcactctcacaatcttctctctaacccttctcatcttcctct |
100 |
Q |
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| T |
10285885 |
atgttatcaatggtgaagtctttggatattctgaaaacaccttcttctgtcaaaatcatcactctcacaatcttctctctaacccttctcatcttcctct |
10285984 |
T |
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| Q |
101 |
tcactcgttactcatcttcaaccaccactatctcttccctcaccttcttctctcctccgtctccagaagat |
171 |
Q |
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| T |
10285985 |
tcactcgttactcctcttcaaccaccactatctcttccctcaccttcttctctcctccttctccagaagat |
10286055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 228 - 366
Target Start/End: Original strand, 10286118 - 10286256
Alignment:
| Q |
228 |
cttccgtataccacccttacccccacaagaaagaattggtctaatagacgaaaatggtgtcatgacagacaatttcacagtcagcaacaacgatgacgat |
327 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10286118 |
cttccgtataccacccttacccccacaagagagaattggtctaatagacgaaaatggtgtcatgacagacaatttcacagtcagcaacaacgatgacgat |
10286217 |
T |
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| Q |
328 |
gaaacattgttaaattggagcttgaacattaccaacaac |
366 |
Q |
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| T |
10286218 |
gaaacattgttaaattggagcttgaacattaccaacaac |
10286256 |
T |
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