View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_18 (Length: 378)
Name: NF10977_low_18
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 23447190 - 23447056
Alignment:
| Q |
20 |
cggtttaaggggagagaagcaattacagtacctagattgttgctctgaacgttttgtatataaccagaatactgacttggtatagaactttccgaagatt |
119 |
Q |
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| T |
23447190 |
cggtttaaggggagagaagcaattacagtacctagactgttgctctgaacgttttgtatataaccagaatactgacttggtatagaactttccgaagatt |
23447091 |
T |
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| Q |
120 |
ctaataaccttgctgttggtggatcctccatggtt |
154 |
Q |
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| T |
23447090 |
ctaataaccttgctgttggtggatcctccatggtt |
23447056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 23438122 - 23438004
Alignment:
| Q |
162 |
ttaattaaaccattaatagttgtattacagagttaatttttaccaccatctataatttcttctcaagtaattttctcaatgagaatatttttacctttct |
261 |
Q |
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| T |
23438122 |
ttaattagaccattaatagttgtattacatagttaattttgaccaccatctgtaatttcttctcaagtaattttctcaatgagaatatttttacatttct |
23438023 |
T |
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| Q |
262 |
aatatggtatcagaacata |
280 |
Q |
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| T |
23438022 |
aatatggtattagaacata |
23438004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 23430270 - 23430161
Alignment:
| Q |
171 |
ccattaatagttgtattacagagttaatttttaccaccatctataatttcttctcaagtaattttctcaatgagaatatttttacctttctaatatggta |
270 |
Q |
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| T |
23430270 |
ccattaatagttttattacagagttaattttgaccactctctgtaatttcttctcaagcaattttcccaaagagaatacttttacatttcaaatatggta |
23430171 |
T |
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| Q |
271 |
tcagaacata |
280 |
Q |
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| T |
23430170 |
ttagaacata |
23430161 |
T |
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