View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_2 (Length: 751)
Name: NF10977_low_2
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 20 - 624
Target Start/End: Complemental strand, 48098482 - 48097896
Alignment:
| Q |
20 |
ggggttactgaattcattactttattccctccaaaatctacgctttcctgaaaacctaactgcttccactctattagaactatcacttttaagagtaagt |
119 |
Q |
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| T |
48098482 |
ggggttaatgaattcattactttattcccttcaaaatctacgctttcctgaaaacctaactgctttcactctattagaactatcacttttaagagta--- |
48098386 |
T |
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| Q |
120 |
tggttgtactgatcgtactcaggatctagataacttttagtcccttgtgcacctgttggaatatgactttgatcagtcagaagatcgtgagagagtaaaa |
219 |
Q |
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| T |
48098385 |
-----------------ctcaggatctagataacttttagtcccttgtgcacctgttggaatatgactttgatcagtcagaagatcgtgagagagtaaaa |
48098303 |
T |
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| Q |
220 |
aatctcttacttttgcatgaaaatcaatgtcaagaggaatatttctggttttaatgtcgttagaagcatgaagatgttttagtgctctagtggtctccac |
319 |
Q |
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| T |
48098302 |
aatctcttacttttgcatgaaaatcaatgtcaagaggattatttctggttttaatgtcgttagaagcatgaagatgttttagtgctctagtggtctccac |
48098203 |
T |
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| Q |
320 |
tacaatattcatcctaaccttctaagttaattttccctctattgctttgttgccatgaacgtgatcagccacagttccattagatacatacccgtagaca |
419 |
Q |
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| T |
48098202 |
tacaatattcatcctaaccttctaagttaattttccctctattgctttgttgccatgaaggtgattagccacagttccattagatacatacccgtagaca |
48098103 |
T |
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| Q |
420 |
agcatgcaattgcgacttccacgtgaggtgcacccatattcattgagcttcttaaacatgtgatacgagcatctttc--aaatactcacattgcctcaat |
517 |
Q |
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| T |
48098102 |
agcatgcaattgcgacttccacgtgaggtgcacccatattcattgagcttcttaaacatgtgatacgagcatctttcaaaaatactcacattgcctcaat |
48098003 |
T |
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| Q |
518 |
tacttcaattttaatagtggaagtggagaattgttgtgaaactacataaatgagctaaggaccatctttctaaaattgcagaaacaactaaaataggaag |
617 |
Q |
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| T |
48098002 |
tacttcaattttaatagcggaagtggagaattgttgtgaaactacataaatgagctaaggaccatctttctaaaattgcagaaacaactaaaataggaag |
48097903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 661 - 735
Target Start/End: Complemental strand, 48097903 - 48097829
Alignment:
| Q |
661 |
gaaaaatactttgatttcttgtcacattgcattatatttctttccactactatataaaccgcctcactttgcttc |
735 |
Q |
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| T |
48097903 |
gaaaaatactttgatttcttgtcacattgcattttttttctttccactactatataaaccgcctcactttgcttc |
48097829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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