View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_27 (Length: 294)
Name: NF10977_low_27
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_27 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 5669517 - 5669781
Alignment:
| Q |
16 |
cttatcactaaaattaagcatacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5669517 |
cttatcactaaaattaagcatacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaag |
5669616 |
T |
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| Q |
116 |
cttcaatgatcaaactagcatcccatgtttggctaccaaaactctgcattatagtgcatttatatacgacgatgcaataatattctagtaattaacttgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5669617 |
cttcaatgatcaaactagcatcccatgtttggctaccaaaactctgcattatagtgcatttatatacgacgatgcaataatattctagtaattaacttgc |
5669716 |
T |
|
| Q |
216 |
atttagatatggtaagattatatttacatgcagggtcattccatcttcagaaacccataaatagt |
280 |
Q |
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| T |
5669717 |
atttagatatggtaagattatatttacatgcagggtcattccatcttcagaaacccataaatagt |
5669781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 5721772 - 5722048
Alignment:
| Q |
17 |
ttatcactaaaattaagcatacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaagc |
116 |
Q |
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|||||||||||| ||| ||||||||||| ||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
5721772 |
ttatcactaaaactaaacatacctgagaattcttgatgtattcatgtccttttgcaagtgttgaaccaatatcctcaactaggttagtggcaagcaaagc |
5721871 |
T |
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| Q |
117 |
ttcaatgatcaaactagcatcccatgtttggctaccaaaactctgcattata-------gtgc---atttatatacgacgatgcaataatattctagtaa |
206 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |
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| T |
5721872 |
ttgaatgatgaaactagcatcccatgtttggctaccaaaactctgcattataaaaatatgtgcattatttatatacgatgatgcaataatattctagtaa |
5721971 |
T |
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| Q |
207 |
ttaacttgcatttagatatggtaagattatatttacatgcagggtcattccatcttcagaaacccataaatagtctg |
283 |
Q |
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||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5721972 |
ttaacttgcatttagatatggtaagataatttatacatgcagggtcattccatcttcagaaatccataaatagtctg |
5722048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 5690174 - 5690398
Alignment:
| Q |
16 |
cttatcactaaaattaagcatacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaag |
115 |
Q |
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||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5690174 |
cttatcactaaaactaaacatacctgagaattcttgatgaatttatgtccttttgcaagtgttggaccaatatcctcaattaggttagtggcaagcaaag |
5690273 |
T |
|
| Q |
116 |
cttcaatgatcaaactagcatcccatgtttggctaccaaaactctgcattata-------gtgcatttatatacgacgatgcaataatattctagtaatt |
208 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
5690274 |
cttgaatgatcaaactagcatcccatgtttggctaccaaaactctgcattataaaaatatgtgcatttatatacgatgatgcaataatattctagtaatt |
5690373 |
T |
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| Q |
209 |
aacttgcatttagatatggtaagat |
233 |
Q |
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|||||||||| ||||||| |||||| |
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| T |
5690374 |
aacttgcattaagatatgataagat |
5690398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 5691617 - 5691660
Alignment:
| Q |
240 |
tacatgcagggtcattccatcttcagaaacccataaatagtctg |
283 |
Q |
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| T |
5691617 |
tacatgcagggtcattccatcttcagcaacccataaatagtctg |
5691660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 165324 - 165184
Alignment:
| Q |
25 |
aaaattaagcatacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaagcttcaatga |
124 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||| | |||| ||| || | |||||| ||||||| |||||||||||||||| |||| |
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| T |
165324 |
aaaattaagcatacctgagatttcttgatgaaatcatgtccttttacaagtgcaggagcagtttcctcaattaggttggtggcaagcaaagcttgaatgg |
165225 |
T |
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| Q |
125 |
tcaaactagcatcccatgtttggctaccaaaactctgcatt |
165 |
Q |
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||||||| ||||||| |||||| |||||| |||||||| |
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| T |
165224 |
caaaactagtatcccatacttggctcccaaaagtctgcatt |
165184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 104718 - 104578
Alignment:
| Q |
25 |
aaaattaagcatacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaagcttcaatga |
124 |
Q |
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|
|||||||| ||||||||||||||||| ||||| ||||||||||| || |||| || | || || ||| ||||||||| |||||||||||||| || | |
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| T |
104718 |
aaaattaaacatacctgagatttcttaatgaaatcatgtcctttggcaagtgcaggttcgatttcatcatttaggttagcggcaagcaaagcttgaacgg |
104619 |
T |
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| Q |
125 |
tcaaactagcatcccatgtttggctaccaaaactctgcatt |
165 |
Q |
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|||| |||||||||| |||||||||||||||||||||| |
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| T |
104618 |
caaaaccagcatcccattcttggctaccaaaactctgcatt |
104578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 12136906 - 12137039
Alignment:
| Q |
35 |
atacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaagcttcaatgatcaaactagc |
134 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| |||| |||||||| ||||| ||| ||||| |||||||||| || |||| |||| | | |
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| T |
12136906 |
atacctgagatttcttgatgaaatcatgtgcttttgcaagtgcaggaccaatttcctcgattaagttagacgcaagcaaagtttgaatggcaaaaccaac |
12137005 |
T |
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| Q |
135 |
atcccatgtttggctaccaaaactctgcattata |
168 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
12137006 |
atcccatttttggctaccaaaactctgcattata |
12137039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 91816 - 91909
Alignment:
| Q |
25 |
aaaattaagcatacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaagctt |
118 |
Q |
| |
|
|||||||| | |||||| |||||||||||||| ||||| ||||| || ||| ||| ||||| |||||||||||| ||||||||||||||||| |
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| T |
91816 |
aaaattaaacttacctgtgatttcttgatgaaatcatgacctttcgcaagtactgggccaatttcctcagttaggccagtggcaagcaaagctt |
91909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 13053277 - 13053194
Alignment:
| Q |
35 |
atacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaagctt |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | || |||| |||||||| || ||| ||| ||| |||||||||||||||| |
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| T |
13053277 |
atacctgagatttcttgatgaagtcatgtcctctggcaagtgcaggaccaatttcttcaattaagtttgtggcaagcaaagctt |
13053194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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