View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_30 (Length: 269)
Name: NF10977_low_30
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 21374635 - 21374414
Alignment:
| Q |
21 |
tttgaaccaccaattgaaatcataagaattgaaatttgtatctttgttgaacaacaaggcatcccaaatctccaatgagagtgggcaatctctaaaggtg |
120 |
Q |
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||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
21374635 |
tttgaaccaccaattgaaatcctgagaattggaatttgtatctttgttgaacaacaaggcatcccagatcgccaatgagagagggcaatctctaaaggtg |
21374536 |
T |
|
| Q |
121 |
tgaagaagtgacttaatactagctccacacctctcggcatgatgaatatgaggttaaatgtctacccacctaaaaggcatttgttggaaggttacaatgc |
220 |
Q |
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||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||| || ||| ||||| ||||||||||||| |||| |
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| T |
21374535 |
tgaagaagtgactcaatactagctccacagctct-tgcatgatgaatctgaggttaaatgtctaccatcccgaaatgcattcgttggaaggttaccatgc |
21374437 |
T |
|
| Q |
221 |
atagacaaccaaataaaatgctt |
243 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
21374436 |
atagctaaccaaataaaatgctt |
21374414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 19816896 - 19817086
Alignment:
| Q |
21 |
tttgaaccaccaattgaaatcataagaattgaaatttgtatctttgttgaacaacaaggcatcccaaatctccaatgagagtgggcaatctctaaaggtg |
120 |
Q |
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||||||||||||||| || || | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
19816896 |
tttgaaccaccaattaaattcttgggaattgaaatttgagtctttgttgaacaacaaggcatcccagatcgccaatgagagagggcaatctctaaaggtg |
19816995 |
T |
|
| Q |
121 |
tgaagaagtgacttaatactagctccacacctctcggcatgatgaatatgaggttaaatgtctacccacctaaaaggcatttgttggaaggt |
212 |
Q |
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| T |
19816996 |
tgaagaagtgactcaatattagctccacatctct-tgcatgatgaatctgaggttaaatgtctactagcccgaaaagcatttgttggaaggt |
19817086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 26292831 - 26293052
Alignment:
| Q |
21 |
tttgaaccaccaattgaaatcataagaattgaaatttgtatctttgttgaacaacaaggcatcccaaatctccaatgagagtgggcaatctctaaaggtg |
120 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||| ||| |||| ||||| |||||||||||||| ||| |
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| T |
26292831 |
tttgaaccaccaattgaaatcctgagaattgaaatttgtatctttgttgaataacaagtcatcccagatcgccaaagagagagggcaatctctaaaagtg |
26292930 |
T |
|
| Q |
121 |
tgaagaagtgacttaatactagctccacacctctcggcatgatgaatatgaggttaaatgtctacccacctaaaaggcatttgttggaaggttacaatgc |
220 |
Q |
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||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||| | || | ||| ||||| ||||||||||||| |||| |
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| T |
26292931 |
tgaagaagtgactcaatactagctccacatctct-tgcatgatgaatctgaggttaaatgtttgccagctcgaaatgcattcgttggaaggttaccatgc |
26293029 |
T |
|
| Q |
221 |
atagacaaccaaataaaatgctt |
243 |
Q |
| |
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|||| |||||||||||||||||| |
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| T |
26293030 |
atagccaaccaaataaaatgctt |
26293052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 7022331 - 7022200
Alignment:
| Q |
21 |
tttgaaccaccaattgaaatcataagaattgaaatttgtatctttgttgaacaacaaggcatcccaaatctccaatgagagtgggcaatctctaaaggtg |
120 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| || ||| |||| ||||| |||||||||||||| ||| |
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| T |
7022331 |
tttgaaccaccaattgaaatcctgagaattgaaatttgtatctttgttgaaaaacaaggcatcgcagatcgccaaagagagagggcaatctctaaaagtg |
7022232 |
T |
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| Q |
121 |
tgaaga---agtgacttaatactagctccaca |
149 |
Q |
| |
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|||||| ||||||| ||||||||||||||| |
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| T |
7022231 |
tgaagaagtagtgactcaatactagctccaca |
7022200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 7021828 - 7021742
Alignment:
| Q |
157 |
gcatgatgaatatgaggttaaatgtctacccacctaaaaggcatttgttggaaggttacaatgcatagacaaccaaataaaatgctt |
243 |
Q |
| |
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||||||||||| |||||||||||||||| | || ||| ||||| ||||||||||||| |||||||| |||||||||||||||||| |
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| T |
7021828 |
gcatgatgaatctgaggttaaatgtctatcagcccgaaatgcattcgttggaaggttaccatgcatagccaaccaaataaaatgctt |
7021742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 54874890 - 54874672
Alignment:
| Q |
21 |
tttgaaccaccaattgaaatcataagaattgaaatttgtatctttgttgaacaacaaggcatcccaaatctccaatgagagtgggcaatctctaaaggtg |
120 |
Q |
| |
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||||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
54874890 |
tttgaaccaccaattaaaatcttgggaattgaaatttgaatctttgttgaacaacaaggcatcccagatcgccaatgagagagggcaatctctaaaggtg |
54874791 |
T |
|
| Q |
121 |
tgaagaagtgacttaatactagctccacacctctcggcatgatgaatatgaggttaaatgtctacccacctaaaaggcatttgttggaaggttacaatgc |
220 |
Q |
| |
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||||||||||||| |||| |||||||||| |||| ||||||||||| ||||||||||||||||| || ||| | ||| ||||||||||||| |||| |
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| T |
54874790 |
tgaagaagtgactcaatattagctccacatctct-tgcatgatgaatctgaggttaaatgtctactagcccgaaaagaattcgttggaaggttaccatgc |
54874692 |
T |
|
| Q |
221 |
atagacaaccaaataaaatg |
240 |
Q |
| |
|
| || ||||||||||||||| |
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| T |
54874691 |
acagccaaccaaataaaatg |
54874672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 15917811 - 15918023
Alignment:
| Q |
25 |
aaccaccaattgaaatcataagaattgaaatttgtatctttgttgaacaacaaggcatcccaaatctccaatgagagtgggcaatct-ctaaaggtgtga |
123 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || || || | |||||||||| |
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| T |
15917811 |
aaccaccaattgaaatcttgagaattgaaatttgtatctttgttgaacaacaaggcatcccagatcgccaatgagagatggaaaactccaaaaggtgtga |
15917910 |
T |
|
| Q |
124 |
agaagtgacttaatactagctccacacctctcggcatgatgaatatgaggttaaatgtctacccacctaaaaggcatttgttggaaggttacaatgcata |
223 |
Q |
| |
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| |||||||| |||||||| |||||| |||| ||||||||||||| ||||||||| ||||| | ||| ||||| ||||||||||||| ||||||| |
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| T |
15917911 |
aaaagtgactcaatactagatccacatctct-tgcatgatgaatataaggttaaatatctactagcactaaatgcattcgttggaaggttaccatgcata |
15918009 |
T |
|
| Q |
224 |
gacaaccaaataaa |
237 |
Q |
| |
|
| |||| ||||||| |
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|
| T |
15918010 |
gccaacaaaataaa |
15918023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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