View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10977_low_31 (Length: 261)
Name: NF10977_low_31
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_31 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 40114013 - 40114257
Alignment:
| Q |
17 |
agtgtccatgtgccatttcgaattaaggcatcaaactcctcagaaatagcttgtctccaatgggaatatttcatggcttgtcggatattagatggttcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40114013 |
agtgtccatgtgccatttcgaattaaggcatcaaactcctcagaaatagcttgtctccaatgggaatattttatggcttgtcggatattagatggttcaa |
40114112 |
T |
|
| Q |
117 |
ggttctcaggtaatggatgaacagatgcatggtaaagtttctttggtttgaatatgttgttttgggatctagtaaccacatgattgcgatcattagcacc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40114113 |
ggttctcaggtaatggatgaacagatgcatggtaaagtttctttgttttgaatatgttgttttgggatctagtgaccacatgattgcgatcattagcacc |
40114212 |
T |
|
| Q |
217 |
tgcaatggggttaggtagaatcataggtaggtttaaagtagaaga |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40114213 |
tgcaatggggttaggtagaatcataggtaggtttgaagtagaaga |
40114257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 655132 - 655327
Alignment:
| Q |
17 |
agtgtccatgtgccatttcgaattaaggcatcaaactcctcagaaatagcttgtctccaatgggaatatttcatggcttgtcggatattagatggttcaa |
116 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| | ||| || ||||| |||||||||||||| |||| || ||||||||||| |||| |||| || || | |
|
|
| T |
655132 |
agtgaccatgtaccatttcgaattaaggcattgagctcttcggaaatggcttgtctccaatgagaatgttgcatggcttgtctgatactagagggctcca |
655231 |
T |
|
| Q |
117 |
ggttctcaggtaatggatgaacagatgcatggtaaa---gtttctttggtttgaatatgttgttttgggatctagtaaccacatgattgcgatcatt |
210 |
Q |
| |
|
|| ||| | | ||||| | ||||| |||||| | ||| |||||||| || ||||||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
655232 |
aattttca-gaagtggatagagagatgtatggtagaattttttgtttggtttaaagatgttgttttgagatctagtaacaacatgatagcgatcatt |
655327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University