View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_33 (Length: 252)
Name: NF10977_low_33
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 6813108 - 6812882
Alignment:
| Q |
18 |
tatatattcatttcattcaaattaattaagactatgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatgg |
117 |
Q |
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| T |
6813108 |
tatatattcatttcattcaaattaattaatactatgtaggtttggcacttcaaataattggaatgtatccaaagctggtgaatgctgtaaaccatgatgg |
6813009 |
T |
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| Q |
118 |
attatcacctctccatattcttgctaggaaacctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacat |
217 |
Q |
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| T |
6813008 |
attatcacctctccatattcttgctaggaaacctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacat |
6812909 |
T |
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| Q |
218 |
catttttataaaattttctttcttctc |
244 |
Q |
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| T |
6812908 |
catttttataaaattttctttcttctc |
6812882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 6819664 - 6819458
Alignment:
| Q |
18 |
tatatattcatttcattcaaattaattaagactatgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatgg |
117 |
Q |
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| T |
6819664 |
tatatattcatttcattcaaattaattaatactatgtaggtttggcaattcaaataattggaatgtatccaaagcttgtgaatgctgtaaatcatgatgg |
6819565 |
T |
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| Q |
118 |
attatcacctctccatattcttgctaggaaacctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacat |
217 |
Q |
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| T |
6819564 |
attatcacctctgcatattcttgctaggaagcctaattgtttcagaagctgcacaacgatggtgctaattgaacgtattatctacacttgtaagtaacat |
6819465 |
T |
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| Q |
218 |
cattttt |
224 |
Q |
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| T |
6819464 |
cactttt |
6819458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 6833981 - 6833814
Alignment:
| Q |
52 |
tgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaaacct |
151 |
Q |
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| T |
6833981 |
tgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgttgtaaaccatgaaggattatcacctctgcatattcttgctaggaaacct |
6833882 |
T |
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| Q |
152 |
aattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatca |
219 |
Q |
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| T |
6833881 |
aattgtttcagaagctgcacaaggatggagttgattgatcgtatcatttacacttgtaagtaacatca |
6833814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 34778543 - 34778383
Alignment:
| Q |
48 |
actatgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaa |
147 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
34778543 |
actatgtagatttggcacttcaattaattggaatgtatccaaagcttgtgaatgctgtaaac-------------cacctctgcatattcttgctaggaa |
34778457 |
T |
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| Q |
148 |
acctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatcattttt |
224 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| || |||||| |||||||||||||||| |||| |
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| T |
34778456 |
gcctaattgtttcagaagtggcacaaggctggagctaattgaacgt---atctacccttgtaagtaacatcactttt |
34778383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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