View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_38 (Length: 224)
Name: NF10977_low_38
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_38 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 46283571 - 46283497
Alignment:
| Q |
132 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagcca |
206 |
Q |
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| T |
46283571 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagcca |
46283497 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 3898713 - 3898788
Alignment:
| Q |
132 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccat |
207 |
Q |
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| T |
3898713 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccat |
3898788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46283702 - 46283656
Alignment:
| Q |
1 |
agccaaacccaatcttataggatgagttgatggaagatccgcagcag |
47 |
Q |
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| T |
46283702 |
agccaaacccaatcttataggatgagttgatggaagatccgcagcag |
46283656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 5044 - 5119
Alignment:
| Q |
132 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccat |
207 |
Q |
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| T |
5044 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccat |
5119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4883 - 4929
Alignment:
| Q |
1 |
agccaaacccaatcttataggatgagttgatggaagatccgcagcag |
47 |
Q |
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| T |
4883 |
agccaaacccaatcttataggatgagaagatcgaagatccgcagcag |
4929 |
T |
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