View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_39 (Length: 221)
Name: NF10977_low_39
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 14621108 - 14621277
Alignment:
| Q |
20 |
cccattagcatttcatcaaacacgtaacagacattattaaaacaccaaaatcaagaacttacagcttcagaccatcgcgaacaaacggtataatccgaac |
119 |
Q |
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| T |
14621108 |
cccattagcatttcatcaaacacgtaacagacattattaaaacaccaaaatcaagaacttacagcttcagaccatcgcgaacaaacggtataatccgaac |
14621207 |
T |
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| Q |
120 |
acacccgaattgaatcgccaattccctcacatcaagcttcaacctaaacacaaattcatcgttaacaaat |
189 |
Q |
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| T |
14621208 |
acacccgaattgaatcgccaattccctcacatcaagcttcaacctaaacacaaattcatcattaaaaaat |
14621277 |
T |
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Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 17709073 - 17708910
Alignment:
| Q |
26 |
agcatttcatcaaacacgtaacagacattattaaaacaccaaaatcaagaacttacagcttcagaccatcgcgaacaaacggtataatccgaacacaccc |
125 |
Q |
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||||||| ||||||||||||||| || ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17709073 |
agcattttatcaaacacgtaacatacgttattcaaacaacaaaatcaagaacttacagtttcagaccatcgcgaacaaacggtataatccgaacacaccc |
17708974 |
T |
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| Q |
126 |
gaattgaatcgccaattccctcacatcaagcttcaacctaaacacaaattcatcgttaacaaat |
189 |
Q |
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| T |
17708973 |
aaattgaatcgccaattccctcacatcaagcttcaacctaaacacaaattcatcattaaaaaat |
17708910 |
T |
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