View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10977_low_4 (Length: 613)

Name: NF10977_low_4
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10977_low_4
NF10977_low_4
[»] chr7 (42 HSPs)
chr7 (30-165)||(28664955-28665090)
chr7 (31-144)||(17509248-17509360)
chr7 (31-144)||(17543854-17543966)
chr7 (30-141)||(10574348-10574459)
chr7 (37-144)||(36579362-36579469)
chr7 (36-144)||(11832982-11833091)
chr7 (31-123)||(17473767-17473859)
chr7 (31-123)||(17579355-17579447)
chr7 (37-141)||(45457606-45457710)
chr7 (37-141)||(45482031-45482135)
chr7 (30-144)||(6667359-6667474)
chr7 (30-144)||(5684329-5684443)
chr7 (30-144)||(5709379-5709493)
chr7 (37-123)||(9785302-9785388)
chr7 (30-144)||(42603812-42603926)
chr7 (54-144)||(46026095-46026186)
chr7 (48-141)||(22747568-22747661)
chr7 (37-144)||(32740717-32740824)
chr7 (30-141)||(39533018-39533128)
chr7 (30-132)||(21603439-21603540)
chr7 (31-144)||(41287921-41288035)
chr7 (47-141)||(48304454-48304549)
chr7 (30-88)||(21954861-21954919)
chr7 (30-170)||(21990599-21990740)
chr7 (30-114)||(4621410-4621494)
chr7 (210-296)||(3725814-3725900)
chr7 (30-89)||(15674655-15674713)
chr7 (37-130)||(1281187-1281280)
chr7 (30-88)||(10094462-10094519)
chr7 (37-146)||(24320273-24320382)
chr7 (30-165)||(27535396-27535536)
chr7 (31-144)||(3266346-3266465)
chr7 (30-123)||(39707275-39707368)
chr7 (30-83)||(42644702-42644754)
chr7 (30-88)||(14657864-14657923)
chr7 (261-312)||(23457816-23457867)
chr7 (366-417)||(23457816-23457867)
chr7 (72-141)||(40761556-40761626)
chr7 (30-88)||(43847091-43847148)
chr7 (54-114)||(2622586-2622647)
chr7 (34-78)||(17223134-17223178)
chr7 (30-70)||(29352284-29352324)
[»] chr2 (38 HSPs)
chr2 (29-170)||(34416803-34416944)
chr2 (37-140)||(27095673-27095776)
chr2 (30-145)||(25067815-25067930)
chr2 (37-144)||(44942249-44942356)
chr2 (30-144)||(12704651-12704765)
chr2 (30-144)||(43474171-43474285)
chr2 (35-144)||(15919838-15919947)
chr2 (11-116)||(34963086-34963194)
chr2 (30-144)||(33012041-33012155)
chr2 (37-144)||(11937908-11938016)
chr2 (37-144)||(5754252-5754359)
chr2 (37-144)||(22597099-22597206)
chr2 (36-170)||(36867943-36868080)
chr2 (29-115)||(17268166-17268252)
chr2 (55-144)||(32015184-32015274)
chr2 (31-144)||(13879050-13879171)
chr2 (31-144)||(14019175-14019296)
chr2 (30-87)||(17767594-17767651)
chr2 (30-144)||(31908859-31908973)
chr2 (30-123)||(20561175-20561268)
chr2 (36-144)||(4604356-4604464)
chr2 (37-144)||(9690023-9690130)
chr2 (30-125)||(35333488-35333583)
chr2 (30-132)||(18089435-18089537)
chr2 (30-144)||(38535348-38535462)
chr2 (30-83)||(6431430-6431483)
chr2 (30-110)||(13740703-13740783)
chr2 (30-88)||(4426701-4426758)
chr2 (367-432)||(14441108-14441174)
chr2 (47-135)||(38384501-38384590)
chr2 (29-123)||(4739316-4739408)
chr2 (30-117)||(10287049-10287135)
chr2 (61-144)||(28261966-28262049)
chr2 (30-115)||(9978712-9978797)
chr2 (30-84)||(11798559-11798613)
chr2 (30-88)||(32314463-32314520)
chr2 (30-83)||(17792499-17792552)
chr2 (364-416)||(43191975-43192027)
[»] scaffold0312 (1 HSPs)
scaffold0312 (30-144)||(6101-6215)
[»] chr1 (29 HSPs)
chr1 (30-144)||(424334-424448)
chr1 (30-146)||(14265246-14265362)
chr1 (30-144)||(3232752-3232866)
chr1 (30-144)||(27534663-27534777)
chr1 (30-144)||(7995603-7995718)
chr1 (30-145)||(12871584-12871699)
chr1 (30-145)||(32784071-32784186)
chr1 (30-144)||(42490857-42490971)
chr1 (47-144)||(33487089-33487187)
chr1 (30-144)||(17347563-17347676)
chr1 (30-143)||(29205250-29205363)
chr1 (31-144)||(45193670-45193783)
chr1 (37-144)||(28678180-28678287)
chr1 (30-144)||(4882402-4882516)
chr1 (30-144)||(20411537-20411651)
chr1 (36-113)||(37822394-37822471)
chr1 (30-123)||(9298457-9298549)
chr1 (362-434)||(8234312-8234384)
chr1 (54-145)||(15791554-15791646)
chr1 (30-165)||(42276300-42276434)
chr1 (36-88)||(44517168-44517219)
chr1 (30-86)||(51418037-51418091)
chr1 (30-144)||(18343578-18343692)
chr1 (30-88)||(10627021-10627078)
chr1 (378-415)||(25255908-25255945)
chr1 (354-399)||(35607217-35607262)
chr1 (48-123)||(13488596-13488672)
chr1 (30-82)||(29726639-29726690)
chr1 (68-139)||(33939082-33939154)
[»] chr4 (39 HSPs)
chr4 (36-144)||(24825613-24825721)
chr4 (30-145)||(29268820-29268935)
chr4 (31-170)||(478056-478194)
chr4 (47-123)||(31521967-31522044)
chr4 (36-144)||(43244430-43244538)
chr4 (30-144)||(6911644-6911758)
chr4 (37-170)||(22757029-22757165)
chr4 (30-83)||(22049447-22049500)
chr4 (37-152)||(7060280-7060395)
chr4 (37-144)||(26674336-26674443)
chr4 (30-141)||(26742506-26742617)
chr4 (47-141)||(394333-394428)
chr4 (30-144)||(20399946-20400060)
chr4 (37-142)||(44757092-44757197)
chr4 (36-144)||(7083865-7083973)
chr4 (29-145)||(7861247-7861363)
chr4 (47-123)||(13965545-13965622)
chr4 (30-144)||(30202002-30202116)
chr4 (30-88)||(12717160-12717218)
chr4 (36-144)||(29922798-29922909)
chr4 (36-132)||(24100115-24100211)
chr4 (48-144)||(24568773-24568870)
chr4 (36-123)||(51152110-51152197)
chr4 (37-144)||(8712494-8712601)
chr4 (30-144)||(5814311-5814425)
chr4 (38-144)||(11210364-11210470)
chr4 (30-144)||(25658131-25658245)
chr4 (34-88)||(3159063-3159117)
chr4 (36-145)||(24611848-24611957)
chr4 (30-144)||(39837558-39837673)
chr4 (54-144)||(27394794-27394885)
chr4 (37-118)||(38944197-38944278)
chr4 (30-111)||(50801214-50801295)
chr4 (30-87)||(6881978-6882034)
chr4 (49-144)||(7084170-7084266)
chr4 (30-78)||(27090755-27090803)
chr4 (37-88)||(43493337-43493387)
chr4 (30-83)||(39523435-39523487)
chr4 (366-410)||(8755847-8755891)
[»] chr3 (31 HSPs)
chr3 (37-165)||(53155488-53155616)
chr3 (31-144)||(36691851-36691964)
chr3 (37-152)||(31270279-31270397)
chr3 (30-144)||(32080805-32080919)
chr3 (30-144)||(48652491-48652605)
chr3 (30-152)||(31462797-31462922)
chr3 (37-146)||(49628145-49628255)
chr3 (49-144)||(1074962-1075058)
chr3 (30-86)||(2147749-2147805)
chr3 (37-123)||(11819068-11819154)
chr3 (30-143)||(14585427-14585540)
chr3 (48-144)||(3456907-3457004)
chr3 (37-141)||(30156340-30156443)
chr3 (30-170)||(36624745-36624885)
chr3 (30-144)||(13702023-13702137)
chr3 (30-144)||(55090634-55090748)
chr3 (37-118)||(34960916-34960997)
chr3 (30-88)||(54239069-54239126)
chr3 (37-117)||(35174695-35174775)
chr3 (30-152)||(40013323-40013450)
chr3 (48-144)||(53402594-53402691)
chr3 (37-144)||(4206569-4206676)
chr3 (37-144)||(48400863-48400970)
chr3 (29-123)||(27189444-27189538)
chr3 (37-144)||(39610168-39610283)
chr3 (354-417)||(47944337-47944400)
chr3 (30-80)||(41868345-41868394)
chr3 (30-83)||(22484991-22485043)
chr3 (30-83)||(24483729-24483781)
chr3 (366-415)||(34979177-34979226)
chr3 (30-83)||(38527289-38527341)
[»] scaffold0536 (1 HSPs)
scaffold0536 (31-170)||(2838-2979)
[»] chr6 (17 HSPs)
chr6 (37-144)||(6419908-6420015)
chr6 (30-144)||(12481413-12481527)
chr6 (30-144)||(15590122-15590236)
chr6 (37-144)||(21507858-21507965)
chr6 (37-146)||(14783221-14783330)
chr6 (30-144)||(4921924-4922039)
chr6 (56-144)||(29927447-29927536)
chr6 (30-144)||(8693700-8693817)
chr6 (37-144)||(23654214-23654321)
chr6 (36-123)||(31937468-31937554)
chr6 (30-144)||(2304853-2304967)
chr6 (353-431)||(29920458-29920537)
chr6 (30-144)||(35219947-35220060)
chr6 (30-78)||(2488169-2488217)
chr6 (364-417)||(9307284-9307337)
chr6 (357-417)||(10067713-10067773)
chr6 (30-86)||(19402851-19402906)
[»] chr5 (26 HSPs)
chr5 (30-144)||(17331292-17331406)
chr5 (30-144)||(17699517-17699631)
chr5 (30-170)||(27241002-27241142)
chr5 (30-144)||(6635213-6635328)
chr5 (31-145)||(17096283-17096400)
chr5 (37-141)||(43493839-43493943)
chr5 (36-123)||(42609129-42609216)
chr5 (70-152)||(7771888-7771971)
chr5 (47-146)||(12439693-12439792)
chr5 (30-144)||(28040593-28040707)
chr5 (30-144)||(29097753-29097867)
chr5 (30-123)||(32347757-32347851)
chr5 (48-144)||(6281008-6281105)
chr5 (58-144)||(981095-981182)
chr5 (30-144)||(20483150-20483264)
chr5 (30-88)||(17687226-17687283)
chr5 (48-144)||(26295118-26295215)
chr5 (37-115)||(178156-178234)
chr5 (30-144)||(33164511-33164625)
chr5 (30-124)||(34431044-34431138)
chr5 (38-144)||(39531454-39531558)
chr5 (30-79)||(3740387-3740435)
chr5 (26-83)||(39915583-39915639)
chr5 (30-80)||(39179871-39179920)
chr5 (30-79)||(12891706-12891754)
chr5 (35-87)||(6681922-6681973)
[»] chr8 (32 HSPs)
chr8 (37-146)||(37612615-37612724)
chr8 (31-144)||(10147910-10148024)
chr8 (47-170)||(1810287-1810410)
chr8 (37-144)||(31308106-31308219)
chr8 (30-144)||(2025260-2025374)
chr8 (30-144)||(11161846-11161960)
chr8 (30-144)||(14600749-14600863)
chr8 (30-138)||(30026931-30027039)
chr8 (37-144)||(2234528-2234635)
chr8 (30-125)||(3204807-3204901)
chr8 (30-144)||(41361696-41361810)
chr8 (30-87)||(32779001-32779058)
chr8 (37-115)||(10338880-10338958)
chr8 (30-144)||(24791219-24791333)
chr8 (30-144)||(31202422-31202536)
chr8 (30-144)||(24699794-24699910)
chr8 (36-144)||(1039950-1040057)
chr8 (54-146)||(10334136-10334229)
chr8 (30-144)||(9501553-9501668)
chr8 (30-141)||(12329593-12329704)
chr8 (37-144)||(23971152-23971259)
chr8 (37-144)||(31407806-31407913)
chr8 (30-144)||(39067740-39067854)
chr8 (67-144)||(7583851-7583929)
chr8 (95-132)||(1810431-1810468)
chr8 (366-431)||(6915516-6915581)
chr8 (37-88)||(30039389-30039440)
chr8 (37-88)||(37128544-37128594)
chr8 (30-88)||(2968552-2968610)
chr8 (61-123)||(13576257-13576319)
chr8 (30-86)||(4757188-4757243)
chr8 (210-273)||(21145584-21145648)
[»] scaffold0155 (1 HSPs)
scaffold0155 (30-123)||(35067-35162)
[»] scaffold1379 (2 HSPs)
scaffold1379 (30-141)||(1129-1240)
scaffold1379 (37-83)||(1-46)
[»] scaffold0432 (1 HSPs)
scaffold0432 (30-123)||(2460-2552)
[»] scaffold0056 (1 HSPs)
scaffold0056 (30-170)||(74102-74242)
[»] scaffold0321 (1 HSPs)
scaffold0321 (30-118)||(7167-7255)
[»] scaffold0001 (1 HSPs)
scaffold0001 (30-115)||(404301-404386)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 28664955 - 28665090
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||  ||||||||||||||||| |||| ||||    
T  28664955 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaactcggaggggtgattttagggtcaaaattgaccctaaatcacccat 28665053  T
Q  129 ctaacaagaagaagaaaatggtgatggttagggtttg 165  Q
    || ||||||||||||||  ||||| ||| ||||||||    
T  28665054 ctgacaagaagaagaaaggggtgacggtcagggtttg 28665090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 17509248 - 17509360
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatcatccatct 130  Q
    |||| ||||||||||| ||||| ||||||||||||||||| ||||||||| || |||| |||| |||||| ||||||||||||||||| ||||||| |||    
T  17509248 aaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaaataattcggagggtgattttttggtcaaaattgaccctaaatcatccctct 17509346  T
Q  131 aacaagaagaagaa 144  Q
     | |||||||||||    
T  17509347 gaaaagaagaagaa 17509360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 17543966 - 17543854
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatcatccatct 130  Q
    |||| ||||||||||| ||||| ||||||||||||||||| ||||||||| || |||| |||| |||||| ||||||||||||||||| ||||||| |||    
T  17543966 aaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaaataattcggagggtgattttttggtcaaaattgaccctaaatcatccctct 17543868  T
Q  131 aacaagaagaagaa 144  Q
     | |||||||||||    
T  17543867 gaaaagaagaagaa 17543854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 10574459 - 10574348
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||  |||||| |||||||||||||||| |||||||||||| |||| ||||| ||||||  |||||||||||||||| |||| ||||    
T  10574459 aaaacagaaaatatgta-aaatcgtttattcaattaggataaaaggaaaaacaattcggaggggtgatttttgagtcaaaattgaccctaaatcacccat 10574361  T
Q  129 ctaacaagaagaa 141  Q
    |||| ||||||||    
T  10574360 ctaaaaagaagaa 10574348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 36579362 - 36579469
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    ||||||||||||| || ||||||||| |||||||||||||||||||| |||| ||||| |||||  ||||||||||||||||| ||||||| ||| | ||    
T  36579362 aaaatatgtggaa-tcacttattcaactaggatagaaggaaaaacaattcggaggggtgattttcgggtcaaaattgaccctaaatcatccctcttaaaa 36579460  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  36579461 gaagaagaa 36579469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 11833091 - 11832982
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg--gggggtaatttttaggtcaaaattgaccctagatcatccatctaac 133  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||| |||  |||||| |||||| |||||||||||||| || ||||||| ||| |     
T  11833091 gaaaatatgtg-aaatcacttattcaattaggaaagaaggaaaaacaattcggagggggtgatttttgggtcaaaattgaccataaatcatccctctgaa 11832993  T
Q  134 aagaagaagaa 144  Q
    |||||||||||    
T  11832992 aagaagaagaa 11832982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 17473767 - 17473859
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| |||| ||||| |||||| ||||||||||||||||| ||||    
T  17473767 aaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaaacaattcggaggggtgattttttggtcaaaattgaccctaaatca 17473859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 17579447 - 17579355
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| |||| ||||| |||||| ||||||||||||||||| ||||    
T  17579447 aaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaaacaattcggaggggtgattttttggtcaaaattgaccctaaatca 17579355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 45457606 - 45457710
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||| |||| || || ||||||  |||||||||||||||| |||| || ||||| ||    
T  45457606 aaaatatgtg-aaatcacttattcaattaagatagaaggaaaaacaattcggaggagtgatttttgcgtcaaaattgaccctaaatcacccctctaaaaa 45457704  T
Q  136 gaagaa 141  Q
    ||||||    
T  45457705 gaagaa 45457710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 45482135 - 45482031
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||||| |||||||||||||||||||||| ||||| ||||| |||||  ||||||||||||||||| ||||  | ||| ||||    
T  45482135 aaaatatgtg-aaatcacttatttaattaggatagaaggaaaaacagctcggaggggtgattttggggtcaaaattgaccctaaatcactcctctgacaa 45482037  T
Q  136 gaagaa 141  Q
    ||||||    
T  45482036 gaagaa 45482031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 6667474 - 6667359
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaa-ttaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatcca 127  Q
    ||||| ||||||||||| ||||| ||||||||| |||| ||||||| |||||||| |||| ||||| |||||| ||||||||||||||||| ||||  |     
T  6667474 aaaacagaaaatatgtg-aaatcacttattcaaattagaatagaagaaaaaacaattcggtggggtgatttttgggtcaaaattgaccctaaatcactcc 6667376  T
Q  128 tctaacaagaagaagaa 144  Q
    ||||| |||||||||||    
T  6667375 tctaaaaagaagaagaa 6667359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 5684443 - 5684329
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||| |||| | ||| ||||||  |||||||||||||||| |||| || |    
T  5684443 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaatgaaaaacaattcggagaggtgatttttgcgtcaaaattgaccctaaatcacccct 5684345  T
Q  129 ctaacaagaagaagaa 144  Q
     ||| ||||| |||||    
T  5684344 ttaaaaagaataagaa 5684329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 5709493 - 5709379
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||| |||| | ||| ||||||  |||||||||||||||| |||| || |    
T  5709493 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaatgaaaaacaattcggagaggtgatttttgcgtcaaaattgaccctaaatcacccct 5709395  T
Q  129 ctaacaagaagaagaa 144  Q
     ||| ||||| |||||    
T  5709394 ttaaaaagaataagaa 5709379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 9785388 - 9785302
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||| |||  ||||| |||||| ||||||||||||||||| ||||    
T  9785388 aaaatatgtg-aaatcacttattcaattaagatagaaggaaaaacaattcgaaggggtgatttttgggtcaaaattgaccctaaatca 9785302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 42603812 - 42603926
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||| ||||||||| |||| ||||| ||||||  ||||||||||||| || |||| |  |    
T  42603812 aaaacagaaaatatgtg-aaatcacttattcaattatgatagaatgaaaaacaattcggaggggtgatttttgagtcaaaattgaccataaatcaccgct 42603910  T
Q  129 ctaacaagaagaagaa 144  Q
    |||| |||||||||||    
T  42603911 ctaaaaagaagaagaa 42603926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 46026095 - 46026186
Alignment:
Q  54 cttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    |||||||||||||||||||||||||||||| ||||  | || |||||| ||||||||||||||||| |||| || ||| | |||||||||||    
T  46026095 cttattcaattaggatagaaggaaaaacaattcggatgtgtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaa 46026186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 22747568 - 22747661
Alignment:
Q  48 aaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaa 141  Q
    ||||| |||||||||||||||||||||| ||||||||| || ||||| |||||| ||||||||||||||||| |||| || | | ||||||||||    
T  22747568 aaatcacttattcaattaggatagaagg-aaaacaacttggaggggtgatttttgggtcaaaattgaccctaaatcacccctttgacaagaagaa 22747661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 32740824 - 32740717
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggt-aatttttaggtcaaaattgaccctagatcatccatctaaca 134  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||| | ||||| ||||||||||||| ||| |||| || ||| | |    
T  32740824 aaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcgagggggtgatttttttggtcaaaattgactctaaatca-ccctctgaaa 32740727  T
Q  135 agaagaagaa 144  Q
    ||||||||||    
T  32740726 agaagaagaa 32740717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 39533018 - 39533128
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| || | | | | |||||| ||||||||||||||||| |||| || |    
T  39533018 aaaacagaaaatatgtg-aaatcacttattcaattaagatagaaggaaaaacaattcagagagatgatttttgggtcaaaattgaccctaaatca-ccct 39533115  T
Q  129 ctaacaagaagaa 141  Q
    |||| ||||||||    
T  39533116 ctaaaaagaagaa 39533128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 21603540 - 21603439
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| || |||||||| ||||| |||||||||||||||||||||||||||||| || | |||||  ||||| ||||||||||||||||| |||| || |    
T  21603540 aaaacagagaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcagaggggtgcttttt-ggtcaaaattgaccctaaatcacccct 21603443  T
Q  129 ctaa 132  Q
    ||||    
T  21603442 ctaa 21603439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 41288035 - 41287921
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaaca-actcggg-gggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    |||| ||||||||||| ||||| | |||||||||||||||||||||||||   ||||||  |||| ||| || ||||||||||||||||| |||| || |    
T  41288035 aaacagaaaatatgtg-aaatcacctattcaattaggatagaaggaaaaaatcactcggatgggtgattattgggtcaaaattgaccctaaatcacccct 41287937  T
Q  129 ctaacaagaagaagaa 144  Q
    |||| |||||||||||    
T  41287936 ctaagaagaagaagaa 41287921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 48304454 - 48304549
Alignment:
Q  47 gaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaa 141  Q
    |||||| |||||||||||||||||| ||||||| ||| ||||  |||| |||||| ||||||||||||||||| |||| || ||| | ||||||||    
T  48304454 gaaatcacttattcaattaggatagcaggaaaagcaattcggatgggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaa 48304549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 21954861 - 21954919
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    |||||||| ||||||||||||||  ||||| ||||||||||||| ||||||||||||||    
T  21954861 aaaactgacaatatgtggaaatcatttatttaattaggatagaatgaaaaacaactcgg 21954919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 21990740 - 21990599
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaagg-aaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatcca 127  Q
    ||||| ||| ||||||| ||||| |||||||||||||||||| ||| |||||||| |||| ||||| ||||||  |||||||||||||||| |||| ||     
T  21990740 aaaacagaatatatgtg-aaatcacttattcaattaggatagcaggaaaaaacaattcggaggggtgatttttcagtcaaaattgaccctaaatcacccc 21990642  T
Q  128 tctaacaagaagaagaaaatggtgatggttagggtttgcgaag 170  Q
    ||| | |||||  |||||  ||||| || ||||||||| ||||    
T  21990641 tctgaaaagaaagagaaaggggtgacggctagggtttgagaag 21990599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 4621410 - 4621494
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgac 114  Q
    ||||||||||| || || |||||||||||||||||| | |||||||||||||||||||   | || ||||||||||||||||||||    
T  4621410 aaaactgaaaacatatg-aaatcgcttattcaattatggtagaaggaaaaacaactcgaaagagtgatttttaggtcaaaattgac 4621494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 3725814 - 3725900
Alignment:
Q  210 tatattaaaagagttaatgttagcattaatgaactattttaacatcataga-tattttgattaacaaaatgaacaatcaaaaactatt 296  Q
    ||||| |||||||||||||||| |||||||||| |||||||   ||||||| | |||||||||| ||| ||||||||||| |||||||    
T  3725814 tatatgaaaagagttaatgttaacattaatgaattattttattgtcatagactgttttgattaa-aaagtgaacaatcaagaactatt 3725900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 15674655 - 15674713
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggg 89  Q
    ||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||| |||||    
T  15674655 aaaacagaaaatatgtg-aaatcacttattcaattaggataggaggaaaaacaattcggg 15674713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 1281187 - 1281280
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatct 130  Q
    |||||||||| ||||| ||||||||||||| ||| || ||||||||| ||||  |||| |||||| ||||||||| ||||||| |||| ||||||    
T  1281187 aaaatatgtg-aaatcacttattcaattagaatataatgaaaaacaattcggatgggtgattttttggtcaaaatggaccctaaatcacccatct 1281280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 10094519 - 10094462
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||    
T  10094519 aaaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaaacaattcgg 10094462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 24320273 - 24320382
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||||| ||||| |||||||||||||||||||||   | || ||||||  ||||||||||||| || || | |  ||||||||    
T  24320273 aaaatatgtg-aaatcacttattaaattaagatagaaggaaaaacaactcgaatgagtgatttttgagtcaaaattgaccttaaataaccattctaacaa 24320371  T
Q  136 gaagaagaaaa 146  Q
    |||||||||||    
T  24320372 gaagaagaaaa 24320382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 27535536 - 27535396
Alignment:
Q  30 aaaactgaaaatatgtg-gaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatcca 127  Q
    ||||| |||||||| || |||||| ||||| ||||||| |||||||||||||||| ||||  |||| |||||| | | ||||||||||||| |||| ||     
T  27535536 aaaacagaaaatatatgtgaaatcacttatacaattagaatagaaggaaaaacaattcggatgggtgatttttggataaaaattgaccctaaatcacccc 27535437  T
Q  128 tct---aacaagaagaagaaaatggtgatggttagggtttg 165  Q
    |||   || ||||||||||||| ||||| |  |||||||||    
T  27535436 tctgtaaaaaagaagaagaaaagggtgacgactagggtttg 27535396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 3266465 - 3266346
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaagg------aaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||      ||||||||||||| ||| | ||| || | |||||||||||| || ||||    
T  3266465 aaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaagaaaaaaaacaactcggagggatgattattggatcaaaattgaccataaatca 3266367  T
Q  124 tccatctaacaagaagaagaa 144  Q
     || ||| |||||||||||||    
T  3266366 cccctctgacaagaagaagaa 3266346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 39707368 - 39707275
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||| ||||||||  |||||||  |||||| ||||||||||||| |||||||||||||| | |    |||| ||||||||||||||||| ||||    
T  39707368 aaaagtgaaaatacatggaaataacttatttaattaggatagaaagaaaaacaactcggagtgatgattttgggtcaaaattgaccctaaatca 39707275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 42644754 - 42644702
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa 83  Q
    ||||| || |||||||| ||||| ||||||||||||||||||||||||||||||    
T  42644754 aaaacagagaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaa 42644702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 14657864 - 14657923
Alignment:
Q  30 aaaactgaaaatatgtg-gaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    |||||||||||||| || |||||  |||||||||||| |||||||||||||||| |||||    
T  14657864 aaaactgaaaatatatgtgaaataacttattcaattaagatagaaggaaaaacagctcgg 14657923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 23457816 - 23457867
Alignment:
Q  261 tattttgattaacaaaatgaacaatcaaaaactattataaaacttcgataca 312  Q
    |||||||||||||||| || |||||||| ||||||| ||||| |||||||||    
T  23457816 tattttgattaacaaagtgcacaatcaataactattttaaaatttcgataca 23457867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 23457816 - 23457867
Alignment:
Q  366 tattttgattaacaaaatgaataatcaaaaactattataaaatttcgataca 417  Q
    |||||||||||||||| || | |||||| ||||||| |||||||||||||||    
T  23457816 tattttgattaacaaagtgcacaatcaataactattttaaaatttcgataca 23457867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 40761626 - 40761556
Alignment:
Q  72 aaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaa 141  Q
    |||||||||||  |||| ||||| |||||| ||||||||||||||||| ||||||| ||| | ||||||||    
T  40761626 aaggaaaaacagttcggaggggtgatttttgggtcaaaattgaccctaaatcatccctctgaaaagaagaa 40761556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 43847148 - 43847091
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    ||||| ||||||||||| ||||| |||||||||||||||||  ||||||||||| ||||    
T  43847148 aaaacagaaaatatgtg-aaatcacttattcaattaggataagaggaaaaacaattcgg 43847091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 2622647 - 2622586
Alignment:
Q  54 cttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgac 114  Q
    |||||||||||| ||||||||||||||||| ||||  | || |||||| |||||||||||||    
T  2622647 cttattcaattaagatagaaggaaaaacaattcggatgcgtgatttttgggtcaaaattgac 2622586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 17223178 - 17223134
Alignment:
Q  34 ctgaaaatatgtggaaatcgcttattcaattaggatagaaggaaa 78  Q
    ||||||||||||| ||| ||| ||||||||||| |||||||||||    
T  17223178 ctgaaaatatgtgaaaagcgcatattcaattagtatagaaggaaa 17223134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 29352324 - 29352284
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggata 70  Q
    |||||||| |||||||||||||| |||||| ||||||||||    
T  29352324 aaaactgagaatatgtggaaatcacttatttaattaggata 29352284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 34416803 - 34416944
Alignment:
Q  29 aaaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgggggg-taatttttaggtcaaaattgaccctagatcatcca 127  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||| ||| | |||||| |||||||||||||| ||||||||||     
T  34416803 aaaaactgaaaatatgtg-aaatcacttattcaattaggatataaggaaaaacaattcggagggatgattttttggtcaaaattgaccttagatcatccc 34416901  T
Q  128 tctaacaagaagaagaaaatggtgatggttagggtttgcgaag 170  Q
    ||| | ||||||||||||  ||||| |||||||||||| ||||    
T  34416902 tctgaaaagaagaagaaagaggtgacggttagggtttgagaag 34416944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 27095776 - 27095673
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||| ||||    
T  27095776 aaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaactcggaggggtgatttttaggtcaaaattgaccctaaatcacccatctgacaa 27095678  T
Q  136 gaaga 140  Q
    |||||    
T  27095677 gaaga 27095673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 25067930 - 25067815
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||  |||||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||| |  |    
T  25067930 aaaacagaaaatatgtg-aaatcacttattcaattaaaatagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcacctct 25067832  T
Q  129 ctaacaagaagaagaaa 145  Q
    |||||||||||||||||    
T  25067831 ctaacaagaagaagaaa 25067815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 44942356 - 44942249
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||| || |||| |||||| | ||    
T  44942356 aaaatatgtg-aaatcacttattcaattaggatagaagaaaaaacaactcggaggggtgatttttgggtcaaaattgaccataaatcacccatctgaaaa 44942258  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  44942257 gaagaagaa 44942249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 12704765 - 12704651
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| |||  ||||| |||||| ||||||||||||||||| |||| || |    
T  12704765 aaaacagaaaatatgtg-aaatcacttattcaattaggatataaggaaaaacaattcgaaggggtgatttttgggtcaaaattgaccctaaatcacccct 12704667  T
Q  129 ctaacaagaagaagaa 144  Q
    |||| |||||||||||    
T  12704666 ctaaaaagaagaagaa 12704651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 43474171 - 43474285
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| |||||| |||| ||||| |||||||||||||||||||||||||||||| ||||  |||| |||||| ||||||||||||||||| |||| || |    
T  43474171 aaaacagaaaatttgtg-aaatcacttattcaattaggatagaaggaaaaacaattcggatgggtgatttttgggtcaaaattgaccctaaatcacccct 43474269  T
Q  129 ctaacaagaagaagaa 144  Q
    |||| |||||||||||    
T  43474270 ctaaaaagaagaagaa 43474285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 15919947 - 15919838
Alignment:
Q  35 tgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaac 133  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||| |||| || |||||     
T  15919947 tgaaaatatgtg-aaatcatttattcaattaggatagaaggaaaaacaactcggaggggtgatttttgggtcaaaattgactctaaatcacccctctaat 15919849  T
Q  134 aagaagaagaa 144  Q
    |||||| ||||    
T  15919848 aagaaggagaa 15919838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 34963086 - 34963194
Alignment:
Q  11 cagagacgacgaaatcacaaaa----actgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggggtaatttttaggtca 106  Q
    ||||||||||||||||||||||    || ||||| ||||| ||||| |||||||||||||| ||||||||||||||| || | |||| ||||||||||||    
T  34963086 cagagacgacgaaatcacaaaagaaaacagaaaaaatgtg-aaatcacttattcaattagggtagaaggaaaaacaaatcagagggtgatttttaggtca 34963184  T
Q  107 aaattgaccc 116  Q
    ||||||||||    
T  34963185 aaattgaccc 34963194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 33012155 - 33012041
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||  | || |||||| ||||||||||||||||| |||| || |    
T  33012155 aaaactgaaaatatgtg-aaatcacttattcaattagaatagaaggaaaaacaattcggatgagtgatttttgggtcaaaattgaccctaaatcacccgt 33012057  T
Q  129 ctaacaagaagaagaa 144  Q
    || | |||||||||||    
T  33012056 ctgaaaagaagaagaa 33012041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 11937908 - 11938016
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaa-ggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaaca 134  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||||| |||| ||||| |||||| ||||||||||||||||| |||| || ||| | |    
T  11937908 aaaatatgtg-aaatcacttattcaattaggatagaaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctgaaa 11938006  T
Q  135 agaagaagaa 144  Q
    ||||||||||    
T  11938007 agaagaagaa 11938016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 5754359 - 5754252
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgggggg-taatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| |||||  |||||||| |||||||||||||||||||| |||| ||| | |||||| ||||||||||||||||| |||| || ||||| ||    
T  5754359 aaaatatgtg-aaatcatttattcaactaggatagaaggaaaaacaattcggagggatgatttttgggtcaaaattgaccctaaatcacccctctaaaaa 5754261  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  5754260 gaagaagaa 5754252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 22597206 - 22597099
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||| | |||||| |||||||||||||| || |||| || ||| ||||    
T  22597206 aaaatatgtg-aaatcacttatttaattaggatagaaggaaaaacaactcggagggatgatttttgggtcaaaattgaccttaaatcacccctctgacaa 22597108  T
Q  136 gaagaagaa 144  Q
    ||| |||||    
T  22597107 gaaaaagaa 22597099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 36868080 - 36867943
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatccatct---a 131  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||| || | ||||| ||||||  |||||||||||||||| |||| || |||   |    
T  36868080 gaaaatatgtg-aaatcgcttattgaattagaatagaaggaaaaacaattcagaggggtgatttttgagtcaaaattgaccctaaatcacccctctagaa 36867982  T
Q  132 acaagaagaagaaaatggtgatggttagggtttgcgaag 170  Q
    | |||||||||| |||||||| || ||||||||| ||||    
T  36867981 agaagaagaagagaatggtgacggctagggtttgagaag 36867943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 17268166 - 17268252
Alignment:
Q  29 aaaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgacc 115  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||  ||| | |||||| ||||||||||||||    
T  17268166 aaaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaactcgaagggatgatttttgggtcaaaattgacc 17268252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 32015274 - 32015184
Alignment:
Q  55 ttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    ||||| ||||| |||| ||||||||||||||||| ||||| |||||| ||||||||||||||||| |||| || |||||||| ||||||||    
T  32015274 ttattgaattatgatataaggaaaaacaactcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctaacaaaaagaagaa 32015184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 13879050 - 13879171
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaa--------aaacaactcgg-ggggtaatttttaggtcaaaattgaccctagat 121  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||        ||||||||||| ||||| ||| || ||||||||||||||||| ||    
T  13879050 aaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaagaaaaaaaaaacaactcggaggggtgattattgggtcaaaattgaccctaaat 13879148  T
Q  122 catccatctaacaagaagaagaa 144  Q
    ||||| ||| |||||||||||||    
T  13879149 catccctctgacaagaagaagaa 13879171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 14019175 - 14019296
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaa--------aaacaactcgg-ggggtaatttttaggtcaaaattgaccctagat 121  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||        ||||||||||| ||||| ||| || ||||||||||||||||| ||    
T  14019175 aaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaagaaaaaaaaaacaactcggaggggtgattattgggtcaaaattgaccctaaat 14019273  T
Q  122 catccatctaacaagaagaagaa 144  Q
    ||||| ||| |||||||||||||    
T  14019274 catccctctgacaagaagaagaa 14019296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 17767594 - 17767651
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg 87  Q
    ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  17767594 aaaactgaaaatatgtggaaatcacttatttaattaggatataaggaaaaacaactcg 17767651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 31908859 - 31908973
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||| ||||||| ||| |||||||| ||||  |||| |||||| | ||||||||||| ||| ||||||| |    
T  31908859 aaaacagaaaatatgtg-aaatcacttattcaactaggataaaagaaaaaacaattcggaagggtgatttttggatcaaaattgactctaaatcatccct 31908957  T
Q  129 ctaacaagaagaagaa 144  Q
    |||| |||||||||||    
T  31908958 ctaaaaagaagaagaa 31908973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 20561175 - 20561268
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    ||||| ||||||||||| ||| | ||||||| ||| |||||||||||||||||| |||| ||||| |||||| ||||||||||||||||| ||||    
T  20561175 aaaacagaaaatatgtg-aaaccacttattcgatttggatagaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatca 20561268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 4604356 - 4604464
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatcatccatctaaca 134  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||   | ||||||||| |||||||||||||| || |||| || ||| | |    
T  4604356 gaaaatatgtg-aaatcacttattcaattagaatagaaggaaaaacaactcgaatgagtaatttttgggtcaaaattgaccttaaatcacccttctgata 4604454  T
Q  135 agaagaagaa 144  Q
    | ||||||||    
T  4604455 aaaagaagaa 4604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 9690023 - 9690130
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||  |||| ||||| |||||| ||||||| |||||| || |||| || ||| | ||    
T  9690023 aaaatatgtg-agatcacttattcaattaggatagaaggaaaaacagttcggaggggtgatttttgggtcaaatttgaccttaaatcacccctctgaaaa 9690121  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  9690122 gaagaagaa 9690130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 35333583 - 35333488
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatc 125  Q
    ||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||| ||   ||||| |||||| |||||||||||| |||| ||||||    
T  35333583 aaaacagaaaatatgtg-aaatcacttattcaattaggatagcaggaaaaacaattcttaggggtgatttttgggtcaaaattgatcctaaatcatc 35333488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 18089435 - 18089537
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| ||| |||||||| |||| || || |||||| | ||||||||||||||| |||| || |    
T  18089435 aaaacagaaaatatgtg-aaatcacttattcaattaggatataagaaaaaacaattcggaggagtgatttttggatcaaaattgaccctaaatcacccct 18089533  T
Q  129 ctaa 132  Q
    ||||    
T  18089534 ctaa 18089537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 38535348 - 38535462
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||||||||| || ||   |||||  ||||| ||||||||||||||||| |||| || |    
T  38535348 aaaacagaaaatatgtg-aaatcacttattcaattatgatagaaggaaaaaaaattcaaaggggtgctttttgggtcaaaattgaccctaaatcacccct 38535446  T
Q  129 ctaacaagaagaagaa 144  Q
    || | |||||||||||    
T  38535447 ctgaaaagaagaagaa 38535462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 6431430 - 6431483
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa 83  Q
    ||||||||||||||||||||||| |||||| |||||| ||| ||||||||||||    
T  6431430 aaaactgaaaatatgtggaaatcacttatttaattagaatataaggaaaaacaa 6431483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 13740703 - 13740783
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaat 110  Q
    ||||| |||||||| || ||||| |||||||||||||||||||||||||||||| |||| | ||| |||||| |||||||||    
T  13740703 aaaacagaaaatatatg-aaatcacttattcaattaggatagaaggaaaaacaattcggagtggtgatttttgggtcaaaat 13740783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 4426701 - 4426758
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    ||||| ||||||||||| |||||  ||||||||||||||||||||||||||||| ||||    
T  4426701 aaaacagaaaatatgtg-aaatcatttattcaattaggatagaaggaaaaacaaatcgg 4426758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 432
Target Start/End: Original strand, 14441108 - 14441174
Alignment:
Q  367 attttgattaacaaaatgaataatcaaaaactattataaaatttcgatacaataag-gattattgta 432  Q
    ||||||||||||| |||| ||||||| | |||||| ||||||||||||||||| || ||||||||||    
T  14441108 attttgattaacataatgcataatcatatactattttaaaatttcgatacaatgagagattattgta 14441174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 38384501 - 38384590
Alignment:
Q  47 gaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||| |||||||||||||| || |||||||||||| |||| |  || |||||| ||||||||||||||| | |||| || ||||||||    
T  38384501 gaaatcacttattcaattagggtataaggaaaaacaaatcggagatgtgatttttgggtcaaaattgacccaaaatcacccctctaacaa 38384590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 4739408 - 4739316
Alignment:
Q  29 aaaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||||| ||||||||||| ||||  |||||| ||||||||| |||||||||||||||||| ||||| |||||  ||||  ||||||||||| ||||    
T  4739408 aaaaacagaaaatatgtg-aaattacttatttaattaggatggaaggaaaaacaactcggaggggtgattttggggtc--aattgaccctaaatca 4739316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 10287049 - 10287135
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccct 117  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| ||| |||  ||| |||| ||||| ||||||| |||||||||||||||    
T  10287049 aaaacagaaaatatgtg-aaatcacttattcaattaggataaaag-aaatgcaattcggaggggtgatttttatgtcaaaattgaccct 10287135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 28261966 - 28262049
Alignment:
Q  61 aattaggatagaaggaaaaacaactcggggg-gtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    ||||| ||||||||||||||||| ||||  | || |||||| ||||||||||||||||| |||| |||||| | |||||||||||    
T  28261966 aattatgatagaaggaaaaacaattcggatgagtgatttttgggtcaaaattgaccctaaatcacccatctga-aagaagaagaa 28262049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 9978712 - 9978797
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgacc 115  Q
    ||||| ||||||||||| |||||  ||||||||||| |||| |||||||||||| | |  ||||| |||||| ||||||||||||||    
T  9978712 aaaacagaaaatatgtg-aaatcatttattcaattaagataaaaggaaaaacaatttgaaggggtgatttttgggtcaaaattgacc 9978797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 11798559 - 11798613
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaac 84  Q
    |||||| |||||||||||||||  |||||| |||||||||| |||||||| ||||    
T  11798559 aaaactaaaaatatgtggaaattacttatttaattaggatataaggaaaagcaac 11798613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 32314520 - 32314463
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    ||||| ||||||||||| |||||  |||||||||||||||||||| |||||||| ||||    
T  32314520 aaaacagaaaatatgtg-aaatcatttattcaattaggatagaagaaaaaacaattcgg 32314463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 17792552 - 17792499
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa 83  Q
    ||||||||||||||||| |||||||||||| || ||| | |||| |||||||||    
T  17792552 aaaactgaaaatatgtgaaaatcgcttatttaactagaagagaaagaaaaacaa 17792499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 43191975 - 43192027
Alignment:
Q  364 attattttgattaacaaaatgaataatcaaaaactattataaaatttcgatac 416  Q
    |||||||||||||| |||||| | ||| |||||||||| |||||||| |||||    
T  43191975 attattttgattaataaaatgtacaataaaaaactattttaaaattttgatac 43192027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 6215 - 6101
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| |||| || |    
T  6215 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaactcggaggggtgatttttgggtcaaaattgaccctaaatcacccct 6117  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||||||||||||    
T  6116 ctgacaagaagaagaa 6101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 424334 - 424448
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| |||| || |    
T  424334 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaactcggaggggtgatttttgggtcaaaattgaccctaaatcacccct 424432  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||||||||||||    
T  424433 ctgacaagaagaagaa 424448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 14265362 - 14265246
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||| |||||||||||||||||||||| ||||| ||||| ||||||  |||||||||||||||| |||| ||||    
T  14265362 aaaacagaaaatatgtg-aaatcacttatttaattaggatagaaggaaaaacagctcggaggggtgatttttttgtcaaaattgaccctaaatcacccat 14265264  T
Q  129 ctaacaagaagaagaaaa 146  Q
    || |||||||||| ||||    
T  14265263 ctgacaagaagaaaaaaa 14265246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 3232866 - 3232752
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| |||||  ||||||||||||||||||||||||||||| |||| ||||| |||||| | ||||||||||||||| |||| ||||    
T  3232866 aaaacagaaaatatgtg-aaatcatttattcaattaggatagaaggaaaaacaattcggaggggtgattttttgatcaaaattgaccctaaatcacccat 3232768  T
Q  129 ctaacaagaagaagaa 144  Q
    || | |||||||||||    
T  3232767 ctgaaaagaagaagaa 3232752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 27534777 - 27534663
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgggggg-taatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||| |||| ||| | |||||| ||||||||||||||||| ||||||| |    
T  27534777 aaaacagaaaatatgtg-aaatcacttattcaattaaggtagaaggaaaaacaaatcggagggatgatttttgggtcaaaattgaccctaaatcatccct 27534679  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||||||||||||    
T  27534678 ctgacaagaagaagaa 27534663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 7995603 - 7995718
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |||| | ||| |||||| ||||||||||||||||| |||| || |    
T  7995603 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcggagaggtgatttttgggtcaaaattgaccctaaatcacccct 7995701  T
Q  129 ct-aacaagaagaagaa 144  Q
    || || |||||||||||    
T  7995702 ctgaaaaagaagaagaa 7995718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 12871699 - 12871584
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||||||||||||||| ||||| ||||||| ||||||||| || |||||||||||||| ||||| |||||| ||||||||||||||||| |||| || |    
T  12871699 aaaactgaaaatatgtg-aaatcacttattcgattaggatataatgaaaaacaactcggaggggtgatttttgggtcaaaattgaccctaaatcacccct 12871601  T
Q  129 ctaacaagaagaagaaa 145  Q
    || ||| |||| |||||    
T  12871600 ctgacacgaaggagaaa 12871584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 32784186 - 32784071
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||| || |    
T  32784186 aaaacagaaaatatgtg-aaatcacttattcaataaggatagaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccct 32784088  T
Q  129 ctaacaagaagaagaaa 145  Q
     | | ||||||||||||    
T  32784087 ttgaaaagaagaagaaa 32784071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 42490971 - 42490857
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||||||| ||||||| ||||| |||||||||||| ||||||| ||||||||| |||| ||||| |||||||||||||| ||||||||| |||| |  |    
T  42490971 aaaactgaagatatgtg-aaatcacttattcaattaagatagaacgaaaaacaattcggaggggtgatttttaggtcaaacttgaccctaaatcacctct 42490873  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||||||||||||    
T  42490872 ctgacaagaagaagaa 42490857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 33487089 - 33487187
Alignment:
Q  47 gaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    |||||| | |||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||| || ||| | |||||||||||    
T  33487089 gaaatcacatattcaattaggatagaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaa 33487187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 17347676 - 17347563
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||| ||||| ||||| |||||||  ||| |||||||| |||||||||||||  |||| |||||| ||||||||||||||||| |||||||||    
T  17347676 aaaacagaaaagatgtg-aaatcacttattcctttatgatagaagaaaaaacaactcggatgggtgattttt-ggtcaaaattgaccctaaatcatccat 17347579  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||||||||||||    
T  17347578 ctgacaagaagaagaa 17347563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 29205363 - 29205250
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| |||||||| || ||||| |||||||||||| ||||||||||||||||| ||   ||||| |||||| ||||||||||||||||| |||| || |    
T  29205363 aaaacagaaaatatatg-aaatcacttattcaattatgatagaaggaaaaacaattccaaggggtgatttttgggtcaaaattgaccctaaatcacccgt 29205265  T
Q  129 ctaacaagaagaaga 143  Q
    |||| ||||||||||    
T  29205264 ctaaaaagaagaaga 29205250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 45193670 - 45193783
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaagg-aaaaacaactcggggggtaatttttaggtcaaaattgaccctagatcatccatc 129  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||  ||| || ||| ||||||||||||| |||  || ||    
T  45193670 aaacggaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaaacaactcggaggggtattattgggttaaaattgaccctaaatcgcccctc 45193768  T
Q  130 taacaagaagaagaa 144  Q
    | |||||||||||||    
T  45193769 tgacaagaagaagaa 45193783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 28678180 - 28678287
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggg-gtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||||||||||| ||||||| ||||||||| ||||  | || |||||| ||||||||||||||||| |||| || ||||| ||    
T  28678180 aaaatatgtg-aaatcacttattcaattatgatagaacgaaaaacaattcggacgagtgatttttgggtcaaaattgaccctaaatcacccctctaaaaa 28678278  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  28678279 gaagaagaa 28678287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 4882402 - 4882516
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| || ||||||||| |||| ||||| |||||| |||| |||||||| ||| |||  ||||    
T  4882402 aaaacagaaaatatgtg-aaatcacttattcaattaggatataatgaaaaacaaatcggaggggtgatttttgggtcgaaattgactctaaatcgcccat 4882500  T
Q  129 ctaacaagaagaagaa 144  Q
    || | |||||||||||    
T  4882501 ctgaaaagaagaagaa 4882516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 20411651 - 20411537
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||| | ||| || ||||||||| ||||  |||| |||||| |||||||||||||| || |||| ||||    
T  20411651 aaaacagaaaatatgtg-aaatcacttattcaatttgaataaaaagaaaaacaattcggatgggtgatttttgggtcaaaattgaccataaatcacccat 20411553  T
Q  129 ctaacaagaagaagaa 144  Q
    |||| |||||||||||    
T  20411552 ctaaaaagaagaagaa 20411537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 37822394 - 37822471
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattga 113  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||| || |  ||||||||||| ||||||||||||    
T  37822394 gaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcagaagggtaatttttgggtcaaaattga 37822471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 9298457 - 9298549
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||||| |||||| |||||||||  ||||| || ||||||||||||||||||||||||| |||| |  ||| | ||||||||||||||| ||||    
T  9298457 aaaacttaaaatacgtggaaatcaattatttaactaggatagaaggaaaaacaactcggagggtga-ctttggttcaaaattgaccctaaatca 9298549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 8234312 - 8234384
Alignment:
Q  362 agattattttgattaacaaaatgaataatcaaaaactattataaaatttcgatacaataaggattattgtaac 434  Q
    |||||||||||||||||| |||| | ||| |||||||||| |||||||| |||| | | ||||||||||||||    
T  8234312 agattattttgattaacagaatgcacaattaaaaactattttaaaattttgatatattgaggattattgtaac 8234384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 15791554 - 15791646
Alignment:
Q  54 cttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaa 145  Q
    |||||||||||| |||| |||||||||||||||||  | || ||||||  ||||||||||| |||| |||| || ||  ||||||||||||||    
T  15791554 cttattcaattaagatataaggaaaaacaactcggatgagtgatttttgtgtcaaaattgatcctaaatcagccctccgacaagaagaagaaa 15791646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 42276434 - 42276300
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||||||||||||||| |||||  ||||| ||||| |||||||| |||||||| |||| ||||| |||||  | |||||| | |||||| |||| || |    
T  42276434 aaaactgaaaatatgtg-aaatcagttatttaattatgatagaagaaaaaacaattcggaggggtgattttgtg-tcaaaaataaccctaaatcacccct 42276337  T
Q  129 ctaacaagaagaagaaaatggtgatggttagggtttg 165  Q
    || | ||||||||||||| ||||| |  |||||||||    
T  42276336 ctgaaaagaagaagaaaagggtgacgactagggtttg 42276300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 44517219 - 44517168
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||| ||||    
T  44517219 gaaaatatgtg-aaatcacttattgaattaggatagaaggaaaaacaattcgg 44517168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 51418091 - 51418037
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc 86  Q
    ||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  51418091 aaaacagaaaatatgtg-aaatcactt-ttcaattaggatagaaggaaaaacaactc 51418037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 18343692 - 18343578
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| || ||| ||||| | ||||||||||||||| |||  ||||| |||||| |||||||||||| |||| |||| || |    
T  18343692 aaaacagaaaatatgtg-aaatcactcatttaattaaggtagaaggaaaaacaaatcgaaggggtgatttttgggtcaaaattgatcctaaatcacccct 18343594  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||| || |||||    
T  18343593 ctgacaacaacaagaa 18343578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 10627078 - 10627021
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    ||||| ||||||||||| ||||  ||||||||||||||||| || ||||||||||||||    
T  10627078 aaaacagaaaatatgtg-aaattacttattcaattaggatataaagaaaaacaactcgg 10627021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 25255945 - 25255908
Alignment:
Q  378 caaaatgaataatcaaaaactattataaaatttcgata 415  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  25255945 caaaatgcataatcaaaaactattttaaaatttcgata 25255908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 35607262 - 35607217
Alignment:
Q  354 aacgtcatagattattttgattaacaaaatgaataatcaaaaacta 399  Q
    |||||||||||||||||||| |||| ||||| | ||||||||||||    
T  35607262 aacgtcatagattattttgactaacgaaatgcacaatcaaaaacta 35607217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 13488596 - 13488672
Alignment:
Q  48 aaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    ||||| |||||||||||| | | ||||||||||||| ||||  |||| |||||| ||||||||| ||||||| ||||    
T  13488596 aaatcacttattcaattaaggtggaaggaaaaacaaatcggatgggtgatttttgggtcaaaatcgaccctaaatca 13488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 29726639 - 29726690
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaaca 82  Q
    ||||| ||||||||||| ||||| ||||||| ||||||||| |||||||||||    
T  29726639 aaaacagaaaatatgtg-aaatcacttattcgattaggatataaggaaaaaca 29726690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 33939082 - 33939154
Alignment:
Q  68 atagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaag 139  Q
    |||||| ||||||||| || | ||||| |||||| ||||||||||||||||| |||| || ||||| ||||||    
T  33939082 atagaaagaaaaacaattcagaggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaag 33939154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 24825721 - 24825613
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaaca 134  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |||| |||| || |||||||    
T  24825721 gaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaactcggaggagtgatttttaggtcaaaattgatcctaaatcacccctctaaca 24825623  T
Q  135 agaagaagaa 144  Q
    ||||||||||    
T  24825622 agaagaagaa 24825613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 29268820 - 29268935
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||  |||||||||||||| || |||| || |    
T  29268820 aaaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaaacaactcggaggggtgattttagggtcaaaattgaccttaaatcacccct 29268918  T
Q  129 ctaacaagaagaagaaa 145  Q
    || ||||||||||||||    
T  29268919 ctgacaagaagaagaaa 29268935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 478056 - 478194
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatcatccatct 130  Q
    |||| ||||||||||  ||||| ||||||||||||||||| |||||||||||| ||||  ||| |||||| |||||||||||||| || |||| || |||    
T  478056 aaacagaaaatatgta-aaatcacttattcaattaggatataaggaaaaacaattcggatggtgatttttgggtcaaaattgaccataaatcacccctct 478154  T
Q  131 aacaagaagaagaaaatggtgatggttagggtttgcgaag 170  Q
    || ||||||||||||  ||||| || ||||||||| ||||    
T  478155 aaaaagaagaagaaaggggtgacggctagggtttgagaag 478194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 31522044 - 31521967
Alignment:
Q  47 gaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||    
T  31522044 gaaatcacttattcaattaggatagaaggaaaaacaattcggaggggtgatttttaggtcaaaattgaccctaaatca 31521967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 43244430 - 43244538
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatccatctaaca 134  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||| || | ||||| |||||| ||||||||||||||||| |||| || ||||| |    
T  43244430 gaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcagaggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaa 43244528  T
Q  135 agaagaagaa 144  Q
    | ||||||||    
T  43244529 aaaagaagaa 43244538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 6911758 - 6911644
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgggg-ggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||| |||| | ||| |||||| | ||||||||||||||| |||| || |    
T  6911758 aaaacagaaaatatgtg-aaatcacttattcaattaaggtagaaggaaaaacaaatcggagaggtgatttttggatcaaaattgaccctaaatcacccct 6911660  T
Q  129 ctaacaagaagaagaa 144  Q
    ||||||||||||||||    
T  6911659 ctaacaagaagaagaa 6911644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 22757165 - 22757029
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatct---aa 132  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||| |||| | ||| ||||||  |||||||||||||||| |||| || |||   ||    
T  22757165 aaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcggagtggtgatttttgagtcaaaattgaccctaaatcacccctctgaaaa 22757067  T
Q  133 caagaagaagaaaatggtgatggttagggtttgcgaag 170  Q
     ||||||||||||| ||||| || ||||||||| ||||    
T  22757066 gaagaagaagaaaagggtgacggctagggtttgagaag 22757029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 22049447 - 22049500
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa 83  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22049447 aaaactgaaaatatgtggaaatcacttattcaattaggatagaaggaaaaacaa 22049500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 7060395 - 7060280
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||| |||||| ||| ||||||||||||| || | || ||| | ||    
T  7060395 aaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcggaggggtgatttttgggttaaaattgaccctaaattacccctctgaaaa 7060297  T
Q  136 gaagaagaaaatggtga 152  Q
    |||||| |||| |||||    
T  7060296 gaagaaaaaaaaggtga 7060280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 26674443 - 26674336
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||||||||||| ||||||||||||| ||| | || ||||| ||||||||||||||||||| |||| |||| |||||| | ||    
T  26674443 aaaatatgtg-aaatcacttattcaattatgatagaaggaaaagcaatttggaggggtgatttttaggtcaaaattgatcctaaatcacccatctgaaaa 26674345  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  26674344 gaagaagaa 26674336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 26742506 - 26742617
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||| ||||||||| ||||  |||| |||||| |||||||||||| |||| |||| ||||    
T  26742506 aaaacagaaaatatgtg-aaatcacttattcaattaagatagaaagaaaaacaattcggatgggtgatttttgggtcaaaattgatcctaaatcacccat 26742604  T
Q  129 ctaacaagaagaa 141  Q
    |||| ||||||||    
T  26742605 ctaaaaagaagaa 26742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 394333 - 394428
Alignment:
Q  47 gaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaa 141  Q
    |||||| |||||| ||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||| || || || ||||||||    
T  394333 gaaatcacttattgaattaggatagaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctccaaaaagaagaa 394428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 20399946 - 20400060
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| |||||||| || ||||| ||||||||||||||||||||| |||| ||| ||||| |||| |||||| ||||||||||||||||| |||  || |    
T  20399946 aaaacagaaaatatatg-aaatcacttattcaattaggatagaagaaaaagcaattcgggtgggtgatttttgggtcaaaattgaccctaaatcgccctt 20400044  T
Q  129 ctaacaagaagaagaa 144  Q
    |||| |||||||||||    
T  20400045 ctaaaaagaagaagaa 20400060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 44757092 - 44757197
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||   |||| |||||| |||||||||||||| || |||| || ||| | ||    
T  44757092 aaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaactcgaatgggtgatttttgggtcaaaattgaccttaaatcacccctctgataa 44757190  T
Q  136 gaagaag 142  Q
    |||||||    
T  44757191 gaagaag 44757197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 7083865 - 7083973
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatccatctaaca 134  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||||| ||   ||||| |||||| | ||||||||||||||| || |||||||| | |    
T  7083865 gaaaatatgtg-aaatcacttattcaattatgatagaaggaaaaacaattcataggggtgatttttggatcaaaattgaccctaaattatccatctgaaa 7083963  T
Q  135 agaagaagaa 144  Q
    ||||||||||    
T  7083964 agaagaagaa 7083973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 7861247 - 7861363
Alignment:
Q  29 aaaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgggg-ggtaatttttaggtcaaaattgaccctagatcatcca 127  Q
    |||||| ||||||||||| ||||| |||||| |||||||||||||||||||| || || | | ||| |||||| ||||||||||||  ||| |||| |||    
T  7861247 aaaaacagaaaatatgtg-aaatcacttatttaattaggatagaaggaaaaataattcagagtggtgatttttgggtcaaaattgattctaaatcaccca 7861345  T
Q  128 tctaacaagaagaagaaa 145  Q
    ||| ||||||||||||||    
T  7861346 tctgacaagaagaagaaa 7861363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 13965622 - 13965545
Alignment:
Q  47 gaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||||| |||||||||||||||||||||||||||||| |||  ||||| |||||| ||||||||||||||||| ||||    
T  13965622 gaaatcacttattcaattaggatagaaggaaaaacaattcgaaggggtgatttttgggtcaaaattgaccctaaatca 13965545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 30202116 - 30202002
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| |||| |||||||||||||| |  ||||| |||||| | |||||||||||| || |||| || |    
T  30202116 aaaacagaaaatatgtg-aaatcacttattcaattaagataaaaggaaaaacaactagaaggggtgatttttggatcaaaattgaccttaaatcacccct 30202018  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||||||||||||    
T  30202017 ctgacaagaagaagaa 30202002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 12717160 - 12717218
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    ||||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||    
T  12717160 aaaactgaaaatatgtggaaatcacttatttaattaggatagaagaaaaaacaagtcgg 12717218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 29922909 - 29922798
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaa---caactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatcta 131  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||   ||||| || ||||| ||| |||||||||||||||||||| |||| |  |||     
T  29922909 gaaaatatgtg-aaatcacttattcaattaggatagaaagaaaaaaaacaacttggaggggtgattattaggtcaaaattgaccctaaatcacctctctg 29922811  T
Q  132 acaagaagaagaa 144  Q
    |||||||||||||    
T  29922810 acaagaagaagaa 29922798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 24100211 - 24100115
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaa 132  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||  ||||||||||| | |||||||||| |||| |||| || |||||    
T  24100211 gaaaatatgtg-aaatcacttattcaattacgatagaaggaaaaacaattcggatgggtaatttttggttcaaaattgatcctaaatcacccctctaa 24100115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 24568773 - 24568870
Alignment:
Q  48 aaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    ||||| ||||||||||||||||||||||||||| || ||||  |||| |||||| |||||||||| |||||| |||| || ||| | |||||||||||    
T  24568773 aaatcacttattcaattaggatagaaggaaaaataattcggaagggtgatttttgggtcaaaattcaccctaaatcacccctctgaaaagaagaagaa 24568870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 51152197 - 51152110
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||| |||| ||||| |||||| |||||| ||||||| || ||||    
T  51152197 gaaaatatgtg-aaatcacttattaaattaggatagaaggaaaaacaattcggaggggtgatttttgggtcaatattgaccntaaatca 51152110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 8712601 - 8712494
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||| |||| |||||||||||||||||||| |  | ||||| |||||| ||||||||||||||||| |||| || | ||| ||    
T  8712601 aaaatatgtg-aaatcacttactcaactaggatagaaggaaaaacaattatgaggggtgatttttgggtcaaaattgaccctaaatcacccctgtaaaaa 8712503  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  8712502 gaagaagaa 8712494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 5814425 - 5814311
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    |||||| |||||||||| ||||  |||||||||||| ||||||||| ||||||||| || ||| | |||||| | ||||||||||||||| |||| |       
T  5814425 aaaactaaaaatatgtg-aaataacttattcaattaagatagaagggaaaacaacttggagggatgatttttggatcaaaattgaccctaaatcacctcc 5814327  T
Q  129 ctaacaagaagaagaa 144  Q
    ||||||||||||||||    
T  5814326 ctaacaagaagaagaa 5814311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 11210364 - 11210470
Alignment:
Q  38 aaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaag 136  Q
    ||||||||| ||||| |||||||||||| ||| | |||||||| || |||| ||||| ||||||||| |||||||||||||| |||| || ||||  |||    
T  11210364 aaatatgtg-aaatcacttattcaattatgatgggaggaaaaataattcggaggggtgatttttagggcaaaattgaccctaaatcacccctctacaaag 11210462  T
Q  137 aagaagaa 144  Q
    ||||||||    
T  11210463 aagaagaa 11210470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 25658245 - 25658131
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||| |||||||| |||||||||||||| | || | ||| ||||||  ||||||||| |||||| |||| || |    
T  25658245 aaaacagaaaatatgtg-aaatcacttattaaattaggaaagaaggaaaaacaatttggagaggtgatttttgagtcaaaattaaccctaaatcacccct 25658147  T
Q  129 ctaacaagaagaagaa 144  Q
    |||| |||||||||||    
T  25658146 ctaaaaagaagaagaa 25658131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 3159117 - 3159063
Alignment:
Q  34 ctgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    ||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  3159117 ctgaaaatatgtgaaaatcacttatttaattatgatagaaggaaaaacaactcgg 3159063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 24611848 - 24611957
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaac-tcggggggtaatttttaggtcaaaattgaccctagatcatccatctaaca 134  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||  || | | ||||| |||||| |||| ||||||||| || |||| || ||||| |    
T  24611848 gaaaatatgtg-aaatcacttattcaattaggatagaagggaaaatgacttagaggggtgatttttgggtctaaattgaccataaatcacccctctaaga 24611946  T
Q  135 agaagaagaaa 145  Q
    |||||||||||    
T  24611947 agaagaagaaa 24611957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 39837673 - 39837558
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaagg-aaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatcca 127  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| |||| ||||| || |||  ||||| |||||| ||||||||||||| ||| |||| ||     
T  39837673 aaaacagaaaatatgtg-aaatcacttattcaattaggataaaagggaaaaaaaaatcgaaggggtgatttttgggtcaaaattgacgctaaatcacccc 39837575  T
Q  128 tctaacaagaagaagaa 144  Q
    ||| | |||||||||||    
T  39837574 tctgaaaagaagaagaa 39837558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 27394885 - 27394794
Alignment:
Q  54 cttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    ||||||||||||||||||||||||||| ||  |||  |||| |||||| ||||||||||||||||| |||| || | | | |||||||||||    
T  27394885 cttattcaattaggatagaaggaaaaataatccggaagggtgatttttgggtcaaaattgaccctaaatcacccctgtgaaaagaagaagaa 27394794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 38944197 - 38944278
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgacccta 118  Q
    |||||||||| ||||| ||||||||| || ||||||||||||||||| | || ||||| |||||| || ||||||||||||||    
T  38944197 aaaatatgtg-aaatcacttattcaactacgatagaaggaaaaacaatttggaggggtgatttttgggccaaaattgacccta 38944278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 50801295 - 50801214
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaatt 111  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||| || |||| || || |||||||| ||||||||    
T  50801295 aaaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaaataattcggaggagttatttttagatcaaaatt 50801214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 6882034 - 6881978
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg 87  Q
    ||||| ||||||||||| ||||| |||||| |||||||||||||||||||| ||||||    
T  6882034 aaaacagaaaatatgtg-aaatcacttatttaattaggatagaaggaaaaataactcg 6881978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 7084266 - 7084170
Alignment:
Q  49 aatcgcttattcaattaggatagaaggaaaaacaactcgggggg-taatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    |||| |||||||||||| | ||||||||||||||| ||||  |  |||||||| |||||||||||| |||| |||| || ||| |||| ||||||||    
T  7084266 aatcacttattcaattaaggtagaaggaaaaacaaatcggaagcataatttttgggtcaaaattgaacctaaatcacccctctgacaacaagaagaa 7084170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 27090803 - 27090755
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaa 78  Q
    |||| |||||||| ||||||||| ||||||| |||||||||||||||||    
T  27090803 aaaaatgaaaatacgtggaaatcacttattcgattaggatagaaggaaa 27090755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 43493337 - 43493387
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||| ||||    
T  43493337 aaaatatgtg-aaatcacttattcaattaagatagaaggaaaaacaattcgg 43493387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 39523487 - 39523435
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa 83  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||||    
T  39523487 aaaacagaaaacatgtg-aaatcacttattcaattaggataaaaggaaaaacaa 39523435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 8755891 - 8755847
Alignment:
Q  366 tattttgattaacaaaatgaataatcaaaaactattataaaattt 410  Q
    |||||||| |||||||||| | |||||||||||||| ||||||||    
T  8755891 tattttgactaacaaaatgcaaaatcaaaaactattttaaaattt 8755847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 53155488 - 53155616
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||||| |||||||||| |||||||||||| |||   |||| |||||| ||||||||||||||||| |||| || ||||| ||    
T  53155488 aaaatatgtg-aaatcacttattgaattaggatataaggaaaaacaattcgaatgggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaa 53155586  T
Q  136 gaagaagaaaatggtgatggttagggtttg 165  Q
    ||||||||||||||||||||||||||||||    
T  53155587 gaagaagaaaatggtgatggttagggtttg 53155616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 36691851 - 36691964
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatc 129  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||| |||| || ||    
T  36691851 aaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaataactcggaggggtgatttttgggtcaaaattgaccctaaatcacccctc 36691949  T
Q  130 taacaagaagaagaa 144  Q
    | |||||||| ||||    
T  36691950 tgacaagaaggagaa 36691964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 31270397 - 31270279
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||||||||||||||||||||| || |||  ||||| |||||| ||||||||||||||||| |||| |||||||| ||    
T  31270397 aaaatatgtg-aaatcacttattcaattaggatagaaggaaaaataattcgaaggggtgatttttgggtcaaaattgaccctaaatcacccatctaaaaa 31270299  T
Q  136 g---aagaagaaaatggtga 152  Q
    |   ||||||||||||||||    
T  31270298 gaataagaagaaaatggtga 31270279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 32080805 - 32080919
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| | |||||||||| | ||||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||| ||||    
T  32080805 aaaacagaaaatatgtg-aaatcacctattcaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcacccat 32080903  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||| ||||||||    
T  32080904 ctgacaacaagaagaa 32080919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 48652491 - 48652605
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||| |||| ||||| |||||| ||||||| ||||||||| |||| || |    
T  48652491 aaaacagaaaatatgtg-aaatcacttattcaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaagttgaccctaaatcacccct 48652589  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||||||||||||    
T  48652590 ctgacaagaagaagaa 48652605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 31462797 - 31462922
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||  ||||| ||||||||||||||||| |||||||||||| |||  ||||| |||||| ||||||||||||||||| |||| || |    
T  31462797 aaaacagaaaatatgta-aaatcacttattcaattaggatataaggaaaaacaattcgaaggggtgatttttgggtcaaaattgaccctaaatcacccct 31462895  T
Q  129 ct---aacaagaagaagaaaatggtga 152  Q
    ||   || |||||||||||||||||||    
T  31462896 ctgaaaagaagaagaagaaaatggtga 31462922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 49628145 - 49628255
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccc-tagatcatccatctaaca 134  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||| || | ||||| ||||||||||||||||||||||  | |||| || ||||| |    
T  49628145 aaaatatgtg-aaatcacttattcaactaggatagaaggaaaaacaattcagaggggtgatttttaggtcaaaattgacccaaaaatcacccctctaaaa 49628243  T
Q  135 agaagaagaaaa 146  Q
    ||||||||||||    
T  49628244 agaagaagaaaa 49628255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 1074962 - 1075058
Alignment:
Q  49 aatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    |||| ||||||||||||| ||| |||||||||||||||||  |||| |||||| |||||||||||||| || |||| || ||| |||||||||||||    
T  1074962 aatcacttattcaattagaatataaggaaaaacaactcggatgggtgatttttgggtcaaaattgaccataaatcacccctctgacaagaagaagaa 1075058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 2147805 - 2147749
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc 86  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  2147805 aaaactgaaaatatgtggaaatcacttattcaattaggatagaacgaaaaccaactc 2147749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 11819154 - 11819068
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||||||||| ||||| |||||||||||| | ||||||||||||||| |||| ||||| |||||| ||||||||||||||||| ||||    
T  11819154 aaaatatgtg-aaatcacttattcaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatca 11819068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 14585540 - 14585427
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa-ctcggggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||  | | || || |||||| ||||||||||||| ||| |||| || |    
T  14585540 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaatttagaggagtgatttttgggtcaaaattgactctaaatcacccct 14585442  T
Q  129 ctaacaagaagaaga 143  Q
    || | ||||||||||    
T  14585441 ctgaaaagaagaaga 14585427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 3457004 - 3456907
Alignment:
Q  48 aaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    ||||| |||||||||||||||||||||||||||||| |||| | ||| |||||| | |||||||||||| || |||| || ||| | |||||||||||    
T  3457004 aaatcacttattcaattaggatagaaggaaaaacaattcggagaggtgatttttggatcaaaattgaccataaatcacccctctgaaaagaagaagaa 3456907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 30156340 - 30156443
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||||||||||| |||| ||||||| |||| ||||| |||||| ||||||||||||||||| |||| || ||| | ||    
T  30156340 aaaatatgtg-aaatcacttattcaattaggataaaagg-aaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaa 30156437  T
Q  136 gaagaa 141  Q
    ||||||    
T  30156438 gaagaa 30156443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 36624745 - 36624885
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||| | ||||||||||||||||||||| ||||  |||| |||||| |||||  |||||||||  |||| || |    
T  36624745 aaaacagaaaatatgtg-aaatcacttatttagttaggatagaaggaaaaacaattcggatgggtgatttttgggtcatgattgaccctgaatcacccct 36624843  T
Q  129 ctaacaagaagaagaaaatggtgatggttagggtttgcgaag 170  Q
    || | |||||||| |||| |||||  ||||||||||| ||||    
T  36624844 ctgaaaagaagaataaaagggtgacagttagggtttgagaag 36624885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 13702023 - 13702137
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||| |||||| || |||  ||||| | |||| ||||||||||||||||| |||| || |    
T  13702023 aaaacagaaaatatgtg-aaatcacttattcaattatgatagaaagaaaaataattcgaaggggtgacttttgggtcaaaattgaccctaaatcacccct 13702121  T
Q  129 ctaacaagaagaagaa 144  Q
    || | |||||||||||    
T  13702122 ctgaaaagaagaagaa 13702137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 55090634 - 55090748
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||| ||||| | ||||||||||||||| |||| ||||| |||||| |||  ||||| |||||| |||| || |    
T  55090634 aaaacagaaaatatgtg-aaatcacttatttaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggttgaaattaaccctaaatcacccct 55090732  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||||||||||||    
T  55090733 ctgacaagaagaagaa 55090748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 34960916 - 34960997
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgacccta 118  Q
    |||||||||| ||||| ||||||||||||| ||||||| |||||||| || | ||||| |||||| |||||||||||||||||    
T  34960916 aaaatatgtg-aaatcacttattcaattagaatagaagaaaaaacaattctgaggggtgatttttgggtcaaaattgacccta 34960997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 54239069 - 54239126
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||    
T  54239069 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcgg 54239126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 35174775 - 35174695
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccct 117  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||| ||   ||||| |||||| |||| |||||||||||    
T  35174775 aaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcaaaggggtgatttttgggtcgaaattgaccct 35174695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 40013323 - 40013450
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattagga---tagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatcatc 125  Q
    ||||| ||||||||||| ||||| |||||||||||||||   ||||||||||||||| |||   |||| |||||| ||||||||||||| ||| |||| |    
T  40013323 aaaacagaaaatatgtg-aaatcacttattcaattaggaggatagaaggaaaaacaattcgaatgggtgatttttgggtcaaaattgacactaaatca-c 40013420  T
Q  126 catct---aacaagaagaagaaaatggtga 152  Q
    |||||   || |||||||||||||||||||    
T  40013421 catctgaaaagaagaagaagaaaatggtga 40013450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 53402691 - 53402594
Alignment:
Q  48 aaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    ||||| |||||| |||||| |||||||||||||||| ||||  |||| |||||| |||||||||||||| || ||||  ||| ||| |||||||||||    
T  53402691 aaatcacttattgaattagaatagaaggaaaaacaattcggatgggtgatttttgggtcaaaattgaccttaaatcactcatttaaaaagaagaagaa 53402594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 4206569 - 4206676
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||| | ||||||||||||||||| | |||||||||| |||| ||||| |||||| | |||||||||||| || |||| || ||||| ||    
T  4206569 aaaatatgtgaaaa-cacttattcaattaggatatatggaaaaacaattcggaggggtgattttttgatcaaaattgaccataaatcacccctctaaaaa 4206667  T
Q  136 gaagaagaa 144  Q
    || ||||||    
T  4206668 gaggaagaa 4206676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 48400970 - 48400863
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggg-gtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||||| || |||| ||||||||||||||| || |  | || |||||| ||||||||||||||||| |||| || ||||| ||    
T  48400970 aaaatatgtg-aaatcacttattaaaatagggtagaaggaaaaacaattccgatgtgtgatttttgggtcaaaattgaccctaaatcacccctctaaaaa 48400872  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  48400871 gaagaagaa 48400863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 27189444 - 27189538
Alignment:
Q  29 aaaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    |||||| |||| |||||| ||||  |||||||||||||||||||||||||||||| ||||  | ||||||||| | ||||||||||| ||| ||||    
T  27189444 aaaaacagaaattatgtg-aaattacttattcaattaggatagaaggaaaaacaattcggaagagtaatttttggatcaaaattgactctaaatca 27189538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 39610283 - 39610168
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaa--------aaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatcca 127  Q
    |||||||||| ||||| ||||||||||||||||||||||||        ||||||||||| ||||| ||| || |||||||||||||| || |||| ||     
T  39610283 aaaatatgtg-aaatcacttattcaattaggatagaaggaagaaaaaaaaaacaactcggaggggtgattattgggtcaaaattgaccataaatcacccc 39610185  T
Q  128 tctaacaagaagaagaa 144  Q
    ||| |||||||||||||    
T  39610184 tctgacaagaagaagaa 39610168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 417
Target Start/End: Complemental strand, 47944400 - 47944337
Alignment:
Q  354 aacgtcatagattattttgattaacaaaatgaataatcaaaaactattataaaatttcgataca 417  Q
    ||||||||| |||||||||| ||||||| || | ||||||| |||||| |||||||||||||||    
T  47944400 aacgtcatatattattttgactaacaaagtgcacaatcaaagactattttaaaatttcgataca 47944337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 41868345 - 41868394
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaa 80  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||||||    
T  41868345 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaa 41868394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 22485043 - 22484991
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa 83  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  22485043 aaaacagaaaatatgcg-aaatcacttattcaattaggatagaaggaaaaacaa 22484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 24483729 - 24483781
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa 83  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||| |||||||||    
T  24483729 aaaacagaaaatatgtg-aaatcacttattcaattatgatagaatgaaaaacaa 24483781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 34979177 - 34979226
Alignment:
Q  366 tattttgattaacaaaatgaataatcaaaaactattataaaatttcgata 415  Q
    |||||||| |||||||||| | ||| |||||||||| |||||||||||||    
T  34979177 tattttgactaacaaaatgcacaattaaaaactattttaaaatttcgata 34979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 38527341 - 38527289
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa 83  Q
    ||||| ||||||||||| |||||  ||||||||||| |||||||||||||||||    
T  38527341 aaaacagaaaatatgtg-aaatcatttattcaattaagatagaaggaaaaacaa 38527289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 2979 - 2838
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaa--caactcgg-ggggtaatttttaggtcaaaattgaccctagatcatcca 127  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||||||  |||||||| ||||| ||| || ||||||||||||||||| |||| ||     
T  2979 aaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaaaacaactcggaggggtgattattgggtcaaaattgaccctaaatcacccc 2881  T
Q  128 tctaacaagaagaagaaaatggtgatggttagggtttgcgaag 170  Q
    ||||||||||||||||||  ||||| |  ||||||||| ||||    
T  2880 tctaacaagaagaagaaaggggtgacgactagggtttgagaag 2838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 6419908 - 6420015
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||| |||||| | ||||||||||||||| |||| || ||| ||||    
T  6419908 aaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaactcagaggggtgatttttggatcaaaattgaccctaaatcacccctctgacaa 6420006  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  6420007 gaagaagaa 6420015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 12481413 - 12481527
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||| |||| ||||| |||||| |||||||||||| |||| |||| || |    
T  12481413 aaaacagaaaatatgtg-aaatcacttattcaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgatcctaaatcacccct 12481511  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||||||||||||    
T  12481512 ctgacaagaagaagaa 12481527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 15590122 - 15590236
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||| || | ||||| |||||| ||||||||||||||||| |||| || |    
T  15590122 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaagaaaaaacaattcagaggggtgatttttgggtcaaaattgaccctaaatcacccct 15590220  T
Q  129 ctaacaagaagaagaa 144  Q
    || | |||||||||||    
T  15590221 ctgaaaagaagaagaa 15590236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 21507858 - 21507965
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||| | || ||||| || ||| ||||||||||||||||| |||| || ||||| ||    
T  21507858 aaaatatgtg-aaatcacttattcaactaggatagaaggaaaaacaatttggaggggtgatgtttgggtcaaaattgaccctaaatcacccctctaaaaa 21507956  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  21507957 gaagaagaa 21507965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 14783221 - 14783330
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||| |||| || || |||||| ||||||||||||||||| |||| || |||||  |    
T  14783221 aaaatatgtg-aaatcacttattcaactaggatagaaggaaaaacaattcggaggcgtgatttttgggtcaaaattgaccctaaatcagccctctaaaca 14783319  T
Q  136 gaagaagaaaa 146  Q
    |||||| ||||    
T  14783320 gaagaaaaaaa 14783330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 4921924 - 4922039
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaagg--aaaaacaactcggggggtaatttttaggtcaaaattgaccctagatcatcca 127  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||||  |||||| ||| || |||  |||||| ||||||||||||||||| |||| ||     
T  4921924 aaaactgaaaatatgtg-aaatcacttattcaattaagatagaaggaaaaaaactactgggaggggtatttttgggtcaaaattgaccctaaatcacccc 4922022  T
Q  128 tctaacaagaagaagaa 144  Q
    | |||| ||||||||||    
T  4922023 tttaacgagaagaagaa 4922039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 29927447 - 29927536
Alignment:
Q  56 tattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    |||||||||||||||||||||||||||||| || || || |||||| |||||||||||||| || ||||  ||||| |||||||||||||    
T  29927447 tattcaattaggatagaaggaaaaacaacttggaggagtgatttttgggtcaaaattgaccataaatcactcatctgacaagaagaagaa 29927536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 8693700 - 8693817
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattagga---tagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcatc 125  Q
    ||||| ||||||||||| ||||| |||||||||||||||   ||||||||||||||| ||||  |||| |||||| |||||||||||||| || |||| |    
T  8693700 aaaacagaaaatatgtg-aaatcacttattcaattaggaggatagaaggaaaaacaattcggatgggtgatttttgggtcaaaattgaccttaaatcacc 8693798  T
Q  126 catctaacaagaagaagaa 144  Q
    | ||||| |||||||||||    
T  8693799 cctctaaaaagaagaagaa 8693817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 23654321 - 23654214
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| |||||||| ||| | ||||||||||||||| ||||  |||| |||||| ||||||||||||||||| |||| |  ||| ||||    
T  23654321 aaaatatgtg-aaatcacttattcagttaaggtagaaggaaaaacaaatcggatgggtgatttttgggtcaaaattgaccctaaatcacctctctgacaa 23654223  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  23654222 gaagaagaa 23654214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 31937468 - 31937554
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||||| |||||| |||||||| |||||||| ||||    
T  31937468 gaaaatatgtg-aaatcacttattcaattaggatagaa-gaaaaacaattcggaggggtgatttttgggtcaaaactgaccctaaatca 31937554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 2304853 - 2304967
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| || |||||| |||||||||| | ||| | |||||| ||||||||| || |||| |||| || |    
T  2304853 aaaacagaaaatatgtg-aaatcacttattcaattatgacagaagggaaaacaactcagagggttgatttttgggtcaaaatcgatcctaaatcacccct 2304951  T
Q  129 ctaacaagaagaagaa 144  Q
    |||||||||| |||||    
T  2304952 ctaacaagaaaaagaa 2304967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 353 - 431
Target Start/End: Complemental strand, 29920537 - 29920458
Alignment:
Q  353 caacgtcatagattattttgattaacaaaatgaataatcaaaaactattataaaatttcgatacaat-aaggattattgt 431  Q
    |||| ||| |||||||||| ||||| |||||| |||||||||||||||| | |||||| |||||| | ||||||||||||    
T  29920537 caacatcagagattattttaattaataaaatgcataatcaaaaactattttgaaattttgatacattgaaggattattgt 29920458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 35219947 - 35220060
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| | ||| ||||||| ||| |||||||||||||| ||||| || ||||| ||||||  |||||||||||||||| |||| || |    
T  35219947 aaaacagaaaatatgtg-atatcacttattcgattcggatagaaggaaaa-caacttggaggggtgatttttgagtcaaaattgaccctaaatcacccct 35220044  T
Q  129 ctaacaagaagaagaa 144  Q
    | || |||||||||||    
T  35220045 ccaagaagaagaagaa 35220060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 2488217 - 2488169
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaa 78  Q
    |||| |||||||| ||||||||| ||||||| |||||||||||||||||    
T  2488217 aaaaatgaaaatacgtggaaatcacttattcgattaggatagaaggaaa 2488169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 9307337 - 9307284
Alignment:
Q  364 attattttgattaacaaaatgaataatcaaaaactattataaaatttcgataca 417  Q
    ||||||||||||||| || || ||||| |||||||||| |||||||| ||||||    
T  9307337 attattttgattaacgaagtgcataataaaaaactattttaaaattttgataca 9307284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 10067713 - 10067773
Alignment:
Q  357 gtcatagattattttgattaacaaaatgaataatcaaaaactattataaaatttcgataca 417  Q
    |||| ||| ||||||||||||||||||  | ||||| | |||||| |||||||||||||||    
T  10067713 gtcagagactattttgattaacaaaatacacaatcagagactattttaaaatttcgataca 10067773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 19402851 - 19402906
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc 86  Q
    ||||| ||||||||||| ||||| ||| |||||||| |||| |||||||||||||||    
T  19402851 aaaacagaaaatatgtg-aaatcacttgttcaattatgatacaaggaaaaacaactc 19402906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 17331406 - 17331292
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||| || |    
T  17331406 aaaacagaaaatatgtg-aaatcacttattcaattaagatagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcacccct 17331308  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||| ||||||||    
T  17331307 ctgacaacaagaagaa 17331292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 17699631 - 17699517
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||| ||||  |||    
T  17699631 aaaacagaaaagatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcactcat 17699533  T
Q  129 ctaacaagaagaagaa 144  Q
    || | |||||||||||    
T  17699532 ctgaaaagaagaagaa 17699517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 27241142 - 27241002
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| || | ||||| |||||| |||||||||||| | || |||| ||||    
T  27241142 aaaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaaacaattcagaggggtgatttttgggtcaaaattgatcataaatcacccat 27241044  T
Q  129 ctaacaagaagaagaaaatggtgatggttagggtttgcgaag 170  Q
    |||| ||||||||||||  |||||  | ||||||||| ||||    
T  27241043 ctaaaaagaagaagaaagaggtgacagatagggtttgagaag 27241002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 6635328 - 6635213
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc--ggggggtaatttttaggtcaaaattgaccctagatcatcca 127  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||   | |||| |||||| ||||||||||| ||||| |||||||     
T  6635328 aaaacagaaaatatgtg-aaatcacttattcaattatgatagaaggaaaaacaactcagagagggtgatttttgggtcaaaattggccctaaatcatccc 6635230  T
Q  128 tctaacaagaagaagaa 144  Q
    ||| |||||||| ||||    
T  6635229 tctgacaagaaggagaa 6635213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 17096283 - 17096400
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaagg---aaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatcc 126  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||   |||||||||| || ||||| ||| || ||||||||||||||||| |||| ||    
T  17096283 aaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaaaaacaactgggaggggtgattattgggtcaaaattgaccctaaatcaccc 17096381  T
Q  127 atctaacaagaagaagaaa 145  Q
     ||| ||||||||||||||    
T  17096382 ctctgacaagaagaagaaa 17096400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 43493943 - 43493839
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||| |||| | ||| |||||| | ||||||||||||||| |||| || ||||| ||    
T  43493943 aaaatatgtg-aaatcacttattcaattagaatagaaggaaaaacaattcggagaggtgatttttggatcaaaattgaccctaaatcacccctctaaaaa 43493845  T
Q  136 gaagaa 141  Q
    ||||||    
T  43493844 gaagaa 43493839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 42609216 - 42609129
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||||| ||||  | || |||||||||||||||||||||||| ||||    
T  42609216 gaaaatatgtg-aaatcacttattcaattaggatagaagaaaaaacaattcggatgagtgatttttaggtcaaaattgaccctaaatca 42609129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 7771888 - 7771971
Alignment:
Q  70 agaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaatggtga 152  Q
    |||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||| || ||||| ||||||||||||| |||||    
T  7771888 agaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaaaagggtga 7771971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 12439693 - 12439792
Alignment:
Q  47 gaaatcgcttattcaattaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaa 146  Q
    |||||| ||||||||| |||||||||| ||||||||| |||| |||| |||||||||||||||||  ||||| |||| |  || || |||||||||||||    
T  12439693 gaaatcacttattcaactaggatagaatgaaaaacaattcggagggtgatttttaggtcaaaattatccctaaatcacctctcaaaaaagaagaagaaaa 12439792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 28040707 - 28040593
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||| | | || ||||| |||||| |||||||||||||| || |||| || |    
T  28040707 aaaacagaaaatatgtg-aaatcacttattcaattaggatataaggaaaaacgatttggaggggtgatttttgggtcaaaattgaccgtaaatcacccct 28040609  T
Q  129 ctaacaagaagaagaa 144  Q
    || | |||||||||||    
T  28040608 ctgaaaagaagaagaa 28040593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 29097867 - 29097753
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||| |||| ||||| || ||| ||||||||||||||||| |||| || |    
T  29097867 aaaacagaaaatatgtg-aaatcacttattcaattaaggtagaaggaaaaacaaatcggaggggtgatctttgggtcaaaattgaccctaaatcacccct 29097769  T
Q  129 ctaacaagaagaagaa 144  Q
       |||||||||||||    
T  29097768 aggacaagaagaagaa 29097753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 32347757 - 32347851
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaagg-aaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||| |||| ||||| |||||| ||||||| ||||||||| ||||    
T  32347757 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaaacaagtcggaggggtgatttttgggtcaaagttgaccctaaatca 32347851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 6281105 - 6281008
Alignment:
Q  48 aaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    ||||| ||||||||||||| ||||||||||||| || || | ||||| |||||| |||||||||||||| || |||| || ||||| |||||||||||    
T  6281105 aaatcacttattcaattagaatagaaggaaaaataattcagaggggtgatttttgggtcaaaattgaccataaatcacccctctaaaaagaagaagaa 6281008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 981095 - 981182
Alignment:
Q  58 ttcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    |||||||| |||||||||||||||||||||| ||||  ||| || |||||||||||| |||| |||| || ||||| |||||||||||    
T  981095 ttcaattatgatagaaggaaaaacaactcggaggggcgattattgggtcaaaattgatcctaaatcacccttctaaaaagaagaagaa 981182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 20483264 - 20483150
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaa-ttaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||| |||| ||| |||||||||||| | || |||| |||||| |||||||||||| |||| |||| || |    
T  20483264 aaaacagaaaatatgtg-aaatcacttattcaaattagaataaaaggaaaaacaatttggagggtgatttttgggtcaaaattgatcctaaatcacccct 20483166  T
Q  129 ctaacaagaagaagaa 144  Q
    | || |||||||||||    
T  20483165 ccaaaaagaagaagaa 20483150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 17687283 - 17687226
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    ||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||||||    
T  17687283 aaaactgaaaatatgtg-aaataacttattcaattaagatagaaggaaaaacaactcgg 17687226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 26295118 - 26295215
Alignment:
Q  48 aaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    ||||| |||||||||| ||||||||||||||||||  |||| ||||| |||||| | ||||||||||||||| |||| |  ||||| | |||||||||    
T  26295118 aaatcacttattcaataaggatagaaggaaaaacacttcggaggggtgatttttggatcaaaattgaccctaaatcacctctctaaaatgaagaagaa 26295215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 178156 - 178234
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgacc 115  Q
    |||||||||| ||||| ||||||||||||||||| ||||||| ||||||||| | ||| ||||||  |||||||||||||    
T  178156 aaaatatgtg-aaatcacttattcaattaggatataaggaaacacaactcggagaggtgatttttgagtcaaaattgacc 178234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 33164511 - 33164625
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||| |||| || || ||||||  ||||||||||||| || |||| || |    
T  33164511 aaaacagaaaatatgtg-aaatcacttattcaattaaggtagaaggaaaaacaattcggaggagtgatttttgagtcaaaattgaccataaatcacccct 33164609  T
Q  129 ctaacaagaagaagaa 144  Q
    || |||| || |||||    
T  33164610 ctgacaacaacaagaa 33164625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 34431138 - 34431044
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcat 124  Q
    ||||| ||||||||||| ||||| ||||||||||||  ||||||| |||||||| |||   |||| |||||| ||||||||||||||||| |||||    
T  34431138 aaaacagaaaatatgtg-aaatcacttattcaattaaaatagaagaaaaaacaattcgaatgggtgatttttgggtcaaaattgaccctaaatcat 34431044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 39531454 - 39531558
Alignment:
Q  38 aaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatcatccatctaacaaga 137  Q
    ||||||||| ||||| |||||||||||| ||||||||| |||||||||||| |||    |||| |||||||||||||| || |||| |||||| | ||||    
T  39531454 aaatatgtg-aaatcacttattcaattacgatagaagg-aaaacaactcggagggatgattttgggtcaaaattgaccttaaatcacccatctgagaaga 39531551  T
Q  138 agaagaa 144  Q
     ||||||    
T  39531552 tgaagaa 39531558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 3740435 - 3740387
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaa 79  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  3740435 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaa 3740387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 39915639 - 39915583
Alignment:
Q  26 cacaaaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa 83  Q
    |||||| |||||||||||||||||||| ||||||||| || || ||||||||||||||    
T  39915639 cacaaagactgaaaatatgtggaaatcacttattcaagta-gaaagaaggaaaaacaa 39915583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 39179871 - 39179920
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaa 80  Q
    ||||| ||||||||||| ||||| ||||||||||||| |||||||||||||    
T  39179871 aaaacagaaaatatgtg-aaatcacttattcaattagaatagaaggaaaaa 39179920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 12891754 - 12891706
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaa 79  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||    
T  12891754 aaaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaa 12891706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 6681922 - 6681973
Alignment:
Q  35 tgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg 87  Q
    |||||||||||| ||||| |||||||||||  |||| ||||||||||||||||    
T  6681922 tgaaaatatgtg-aaatcacttattcaattcagataaaaggaaaaacaactcg 6681973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 37612724 - 37612615
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||| || |||| ||||| |||||| ||||||||||||||||| |||| || ||||| ||    
T  37612724 aaaatatgtg-aaatcacttattcaactaggatagaaggaaaaaaaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaa 37612626  T
Q  136 gaagaagaaaa 146  Q
    |||||||||||    
T  37612625 gaagaagaaaa 37612615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 10148024 - 10147910
Alignment:
Q  31 aaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaa-caactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||||| ||| || ||||||||||||||||| |||| || |    
T  10148024 aaacagaaaatatgtg-aaatcacttattcaattaggatagaagaaaaaaacaactcggaggggtgattattgggtcaaaattgaccctaaatcacccct 10147926  T
Q  129 ctaacaagaagaagaa 144  Q
    |||||| |||||||||    
T  10147925 ctaacatgaagaagaa 10147910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 47 - 170
Target Start/End: Original strand, 1810287 - 1810410
Alignment:
Q  47 gaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaa 145  Q
    |||||| |||||| |||||||||||||| ||||| || |||| ||||| |||||| ||||||||||||||||| |||| || ||||| ||||||||||||    
T  1810287 gaaatcacttattgaattaggatagaagaaaaaaaaa-tcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaaa 1810385  T
Q  146 atggtgatggttagggtttgcgaag 170  Q
    | ||||| |  ||||||||| ||||    
T  1810386 agggtgacgactagggtttgggaag 1810410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 31308219 - 31308106
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-------ggggtaatttttaggtcaaaattgaccctagatcatccatc 129  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||       | ||| |||||||| |||||||||||| || |||| || ||    
T  31308219 aaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaactcggagtcggagaggtgatttttagatcaaaattgaccttaaatcacccctc 31308121  T
Q  130 taacaagaagaagaa 144  Q
    |||||||||||||||    
T  31308120 taacaagaagaagaa 31308106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 2025260 - 2025374
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||| ||||| ||||| ||||||||||||| ||| |||||||||||||| ||  |||| |||||| |||||||||||||| || |||| || |    
T  2025260 aaaacagaaaacatgtg-aaatcacttattcaattagaataaaaggaaaaacaacttggaagggtgattttttggtcaaaattgaccataaatcacccct 2025358  T
Q  129 ctaacaagaagaagaa 144  Q
    ||||||||||||||||    
T  2025359 ctaacaagaagaagaa 2025374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 11161960 - 11161846
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||||||||| ||||| ||||  ||||||||||||||||| || ||||||||||| |  ||||| |||||| ||||||||||||||||| || | || |    
T  11161960 aaaactgaaaagatgtg-aaatgacttattcaattaggatataaagaaaaacaacttgaaggggtgatttttgggtcaaaattgaccctaaattacccct 11161862  T
Q  129 ctaacaagaagaagaa 144  Q
    ||||||||||||||||    
T  11161861 ctaacaagaagaagaa 11161846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 14600749 - 14600863
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| |||||  |||||||||||||||||||| |||||||||||||  || | |||||| ||||||||||||||||| |||| |  |    
T  14600749 aaaacagaaaatatgtg-aaatcagttattcaattaggatagaagaaaaaacaactcggatggatgatttttgggtcaaaattgaccctaaatcacctct 14600847  T
Q  129 ctaacaagaagaagaa 144  Q
    |||||||||| |||||    
T  14600848 ctaacaagaaaaagaa 14600863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 30026931 - 30027039
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||| |||||||||||||  |||| |||||| |||||||| |||||||| |||| || |    
T  30026931 aaaacagaaaatatgtg-aaatcacttattcaattatgatagaagaaaaaacaactcggatgggtgatttttgggtcaaaaatgaccctaaatcacccct 30027029  T
Q  129 ctaacaagaa 138  Q
    || |||||||    
T  30027030 ctgacaagaa 30027039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 2234528 - 2234635
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||| |||  ||||| |||||| | |||||||| ||||||||||| || | ||| ||    
T  2234528 aaaatatgtg-aaatcacttattcaactaggatagaaggaaaaacaattcgaaggggtgatttttggatcaaaattaaccctagatcacccttttaaaaa 2234626  T
Q  136 gaagaagaa 144  Q
    |||||||||    
T  2234627 gaagaagaa 2234635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 3204807 - 3204901
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatcatc 125  Q
    ||||| ||||||||||| ||||| || ||| |||||| ||||| |||||||||| |||| ||||||||||| ||||||||||||| ||| ||||||    
T  3204807 aaaacagaaaatatgtg-aaatcactcattaaattagaatagatggaaaaacaattcggagggtaatttttgggtcaaaattgactctaaatcatc 3204901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 41361810 - 41361696
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||| |||| ||||| |||||| |||||||||||||| || |||| || |    
T  41361810 aaaacagaaaatatgtg-aaatcacttattcaattacggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccataaatcacccct 41361712  T
Q  129 ctaacaagaagaagaa 144  Q
       |||||||||||||    
T  41361711 tcgacaagaagaagaa 41361696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 32779001 - 32779058
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg 87  Q
    ||||||||||||||||||||||| |||||| ||||| |||| ||||||||||||||||    
T  32779001 aaaactgaaaatatgtggaaatctcttatttaattatgatataaggaaaaacaactcg 32779058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 10338880 - 10338958
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgacc 115  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||| |||| ||||| ||||||  |||||||||||||    
T  10338880 aaaatatgtg-aaatcacttattcaattaggataaaaggaaaaacaattcggaggggtgatttttgcgtcaaaattgacc 10338958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 24791219 - 24791333
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgggggg-taatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||  ||||| |||||| |||||||||| |||||||||||| ||||  || | |||||| |||||||||||||| || |||| || |    
T  24791219 aaaacagaaaatatgtt-aaatcacttattgaattaggatataaggaaaaacaattcggatggatgatttttgggtcaaaattgaccataaatcacccct 24791317  T
Q  129 ctaacaagaagaagaa 144  Q
    |||| |||||||||||    
T  24791318 ctaaaaagaagaagaa 24791333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 31202536 - 31202422
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgggggg-taatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||  |||||| ||||||||| | ||  || | |||||| |||||||||||||| || |||| ||||    
T  31202536 aaaacagaaaatatgtg-aaatcacttattcaattataatagaaagaaaaacaatttggatggatgatttttgggtcaaaattgaccttaaatcacccat 31202438  T
Q  129 ctaacaagaagaagaa 144  Q
    |||| |||||||||||    
T  31202437 ctaaaaagaagaagaa 31202422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 24699910 - 24699794
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaa--caactcggg-gggtaatttttaggtcaaaattgaccctagatcatcc 126  Q
    ||||| ||||||||||| ||||| |||||| |||||||||| ||| |||||  || |||||  |||| |||||| ||||||||||||||||| |||| ||    
T  24699910 aaaacagaaaatatgtg-aaatcacttatttaattaggatataagaaaaaaaacatctcggatgggtgatttttgggtcaaaattgaccctaaatcaccc 24699812  T
Q  127 atctaacaagaagaagaa 144  Q
     ||| |||||||||||||    
T  24699811 ttctgacaagaagaagaa 24699794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 1039950 - 1040057
Alignment:
Q  36 gaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaaca 134  Q
    ||||||||||| ||||| |||||| |||||| |||||||||||| ||| ||||  |||| |||||| | |||||||||||| || ||||||| ||||| |    
T  1039950 gaaaatatgtg-aaatcacttattgaattagaatagaaggaaaaccaattcggatgggtgatttttggatcaaaattgaccttaaatcatcc-tctaaaa 1040047  T
Q  135 agaagaagaa 144  Q
    ||||||||||    
T  1040048 agaagaagaa 1040057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 10334229 - 10334136
Alignment:
Q  54 cttattcaattaggatagaaggaaaaacaactc-ggggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaa 146  Q
    |||||| ||||||||||||||||||||||||||    | || |||||| | ||||||||||||||| ||||||  ||||||||||||| |||||    
T  10334229 cttatttaattaggatagaaggaaaaacaactcatatgagtgatttttggatcaaaattgaccctaaatcatctctctaacaagaagaggaaaa 10334136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 9501668 - 9501553
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaa-caactcggg-gggtaatttttaggtcaaaattgaccctagatcatcca 127  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||| || |  |||| |||||| | ||||||||||||||| |||| |      
T  9501668 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaaacaattcagatgggtgatttttggatcaaaattgaccctaaatcaccac 9501570  T
Q  128 tctaacaagaagaagaa 144  Q
    | ||| |||||||||||    
T  9501569 tttaaaaagaagaagaa 9501553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 12329704 - 12329593
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| |||    ||| |||||| | ||||||||||| ||| |||| ||||    
T  12329704 aaaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaaacaattcgaaatggtgatttttggatcaaaattgactctaaatcacccat 12329606  T
Q  129 ctaacaagaagaa 141  Q
    || | ||||||||    
T  12329605 ctgaaaagaagaa 12329593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 23971152 - 23971259
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||||||  | || |||||| |||||||||| ||  || |||| |  ||||||||    
T  23971152 aaaatatgtg-aaatcacttattcaattagaatagaaggaaaaacaactcggatgagtgattttttggtcaaaatttactttaaatcacctctctaacaa 23971250  T
Q  136 gaagaagaa 144  Q
    ||| |||||    
T  23971251 gaaaaagaa 23971259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 31407806 - 31407913
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgggggg-taatttttaggtcaaaattgaccctagatcatccatctaacaa 135  Q
    |||||||||| |||||  |||||||| || ||||||||||||||||| |||| | | | |||||| ||||||||||||||||| |||| || ||||| ||    
T  31407806 aaaatatgtg-aaatcatttattcaactatgatagaaggaaaaacaattcggagagatgatttttgggtcaaaattgaccctaaatcacccctctaaaaa 31407904  T
Q  136 gaagaagaa 144  Q
     ||||||||    
T  31407905 taagaagaa 31407913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 39067740 - 39067854
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||| | ||    || |||||| |||||||||||||| || |||| || |    
T  39067740 aaaacagaaaatatgtg-aaatcacttattaaattaggatagaaggaaaaacaatttggaacagtgatttttgggtcaaaattgaccttaaatcacccct 39067838  T
Q  129 ctaacaagaagaagaa 144  Q
    || | |||||||||||    
T  39067839 cttaaaagaagaagaa 39067854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 7583851 - 7583929
Alignment:
Q  67 gatagaaggaaaaacaactcggg-gggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 144  Q
    |||| |||||||||||||||||  |||| |||||| |||||||||||| |||| |||| || ||| |||||||||||||    
T  7583851 gataaaaggaaaaacaactcggatgggtgatttttgggtcaaaattgatcctaaatcacccctctgacaagaagaagaa 7583929  T

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Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 1810468 - 1810431
Alignment:
Q  95 atttttaggtcaaaattgaccctagatcatccatctaa 132  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1810468 atttttaggtcaaaattgaccctaaatcatccatctaa 1810431  T

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Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 6915516 - 6915581
Alignment:
Q  366 tattttgattaacaaaatgaataatcaaaaactattataaaatttcgatacaataaggattattgt 431  Q
    |||||||||||||| |||| | ||||||||| |||| |||||||| |||||| |||||| ||||||    
T  6915516 tattttgattaacataatgcacaatcaaaaattattttaaaattttgatacattaaggactattgt 6915581  T

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Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 30039389 - 30039440
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||| ||||    
T  30039389 aaaatatgtggaaatcacatattcaattagaaaagaaggaaaaacaattcgg 30039440  T

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Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 37128544 - 37128594
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||| ||||    
T  37128544 aaaatatgtg-aaatcacttattcaactaggatagaaggaaaaacaattcgg 37128594  T

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Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 2968610 - 2968552
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg 88  Q
    |||||| |||||||||| ||||| |||||| |||||| ||| || ||||||||||||||    
T  2968610 aaaactaaaaatatgtgaaaatcacttatttaattagaatataaagaaaaacaactcgg 2968552  T

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Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 13576257 - 13576319
Alignment:
Q  61 aattaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatca 123  Q
    ||||||||||||| |||||||||||||| |||    ||||||||||||||||| |||| ||||    
T  13576257 aattaggatagaaagaaaaacaactcggagggatgattttaggtcaaaattgatcctaaatca 13576319  T

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Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 4757243 - 4757188
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactc 86  Q
    ||||| ||||||||||| |||||  ||||| ||||| ||||||||||||||||||||    
T  4757243 aaaacagaaaatatgtg-aaatcatttatttaattatgatagaaggaaaaacaactc 4757188  T

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Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 21145584 - 21145648
Alignment:
Q  210 tatattaaaagagttaatgttagcattaatgaactattttaacatcataga-tattttgattaac 273  Q
    ||||| |||||||||||||| |||||| | | ||||||||||||||| ||| |||||||| ||||    
T  21145584 tatataaaaagagttaatgtcagcattgagggactattttaacatcagagactattttgactaac 21145648  T

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Target: scaffold0155 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 35162 - 35067
Alignment:
Q  30 aaaactgaaaatatgtg-gaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatca 123  Q
    ||||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||  |||| |||||| ||||||||||||||||| ||||    
T  35162 aaaacagaaaatatatgtgaaatcacttattcaattaggatagaaggaaaaacaactcggatgggtgatttttgggtcaaaattgaccctaaatca 35067  T

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Target: scaffold1379 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 1129 - 1240
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcg-gggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||  ||||| |||||| |||||||||||||| || |||| || |    
T  1129 aaaactgaaaatatgtg-aaatcacttattcaattagggtagaaggaaaaacaattcgcaggggtgatttttgggtcaaaattgaccttaaatcacccct 1227  T
Q  129 ctaacaagaagaa 141  Q
    || |||| |||||    
T  1228 ctgacaaaaagaa 1240  T

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Target: scaffold1379; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 46 - 1
Alignment:
Q  37 aaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaa 83  Q
    |||||||||| ||||| |||||||||||| |||||||||||||||||    
T  46 aaaatatgtg-aaatcacttattcaattaagatagaaggaaaaacaa 1  T

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Target: scaffold0432 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 2460 - 2552
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcggggggtaatttttaggtcaaaattgaccctagatca 123  Q
    ||||| ||||||||||| ||||| ||||||| |||| |||||||||||||||||||| | |||| |||||| |||||||| |||||||| ||||    
T  2460 aaaacagaaaatatgtg-aaatcacttattcgattatgatagaaggaaaaacaactcagagggtgatttttgggtcaaaaatgaccctaaatca 2552  T

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Target: scaffold0056 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 74242 - 74102
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgaccctagatcatccat 128  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||  |||| |||||| ||||||||||||  ||| ||||  | |    
T  74242 aaaacagaaaatatgtg-aaatcacttattcaattaggatagaaggaaaaacaattcggatgggtgatttttgggtcaaaattgattctaaatcactcct 74144  T
Q  129 ctaacaagaagaagaaaatggtgatggttagggtttgcgaag 170  Q
    || | || || ||||||| ||||| || ||||||||| ||||    
T  74143 ctgaaaaaaaaaagaaaagggtgacggctagggtttgagaag 74102  T

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Target: scaffold0321 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 7167 - 7255
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgacccta 118  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| |||| ||||| |||||| ||||||| | |||||||    
T  7167 aaaacagaaaatatgtg-aaatcacttattcaattaggataaaaggaaaaacaattcggaggggtgatttttgggtcaaattggacccta 7255  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 404301 - 404386
Alignment:
Q  30 aaaactgaaaatatgtggaaatcgcttattcaattaggatagaaggaaaaacaactcgg-ggggtaatttttaggtcaaaattgacc 115  Q
    ||||| ||||||||||| ||||| |||||||||||||||||| | ||||||| | ||||  |||| |||||| | ||||||||||||    
T  404301 aaaacagaaaatatgtg-aaatcacttattcaattaggatagcaagaaaaactattcggatgggtgatttttggatcaaaattgacc 404386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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