View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10977_low_6 (Length: 586)
Name: NF10977_low_6
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_6 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 2294688 - 2294375
Alignment:
| Q |
11 |
cacagatgtttagggaggaaacataatctataaccgccaagaccaaacagattaacaaaataaaccaacttcaatattactacaacaaagatcatatatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2294688 |
cacagatgtttagggaggaaacataatctataaccgccaagaccaaacagattaacaaaataaaccaacttcaatattactacaacaaagatcatatatt |
2294589 |
T |
|
| Q |
111 |
tttacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttatacaggaaacaagatatataagaaagaacaataacatatgtgaaggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2294588 |
tttacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttatacaggaaacaagatatataagaaagaacaataacatatgtgaaggc |
2294489 |
T |
|
| Q |
211 |
atatatatgtatgcataagggatcattatatgaaacaaaatcccaccatatgacaaatccacatataatactcccctgctgtgttatgacattctcaggc |
310 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2294488 |
atata----tatgcataacggatcattatatgaaacaaaatcccaccatatgacaaatccacatataatactcccctgctgtgttatgacattctcaagc |
2294393 |
T |
|
| Q |
311 |
agagaatctagggtggtt |
328 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2294392 |
agagaatctagggtggtt |
2294375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 375 - 570
Target Start/End: Complemental strand, 2310659 - 2310464
Alignment:
| Q |
375 |
aatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaacc |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2310659 |
aatctatatcctaggagaaatatgaacttgcactggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaacc |
2310560 |
T |
|
| Q |
475 |
ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaac |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2310559 |
ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaac |
2310464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 375 - 570
Target Start/End: Complemental strand, 2294328 - 2294133
Alignment:
| Q |
375 |
aatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaacc |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2294328 |
aatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaacc |
2294229 |
T |
|
| Q |
475 |
ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaac |
570 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2294228 |
ttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaac |
2294133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 375 - 570
Target Start/End: Complemental strand, 2303941 - 2303746
Alignment:
| Q |
375 |
aatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaacc |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||| | |
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|
| T |
2303941 |
aatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctggaagc |
2303842 |
T |
|
| Q |
475 |
ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaac |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||| ||||| ||||| |
|
|
| T |
2303841 |
ttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaac |
2303746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 375 - 570
Target Start/End: Complemental strand, 2321643 - 2321448
Alignment:
| Q |
375 |
aatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaacc |
474 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||| || ||||| |||| | |
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|
| T |
2321643 |
aatctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccaccctccggaagc |
2321544 |
T |
|
| Q |
475 |
ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaac |
570 |
Q |
| |
|
| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2321543 |
tgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaac |
2321448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 378 - 554
Target Start/End: Complemental strand, 2351514 - 2351338
Alignment:
| Q |
378 |
ctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttc |
477 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
2351514 |
ctatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttc |
2351415 |
T |
|
| Q |
478 |
caatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattct |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| ||||| |
|
|
| T |
2351414 |
caatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattct |
2351338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 375 - 570
Target Start/End: Complemental strand, 2327496 - 2327301
Alignment:
| Q |
375 |
aatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaacc |
474 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| | |||| | |||||| ||||| || ||||| |||||| |
|
|
| T |
2327496 |
aatctatattctatgagaaatatgaacttgcaatggatttttcatcaccacggtgaattcaaatttttctgacaaatcgacatggccaccctccggaacc |
2327397 |
T |
|
| Q |
475 |
ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaac |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| || |||||||||||| |
|
|
| T |
2327396 |
ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaaac |
2327301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 376 - 569
Target Start/End: Complemental strand, 2331210 - 2331017
Alignment:
| Q |
376 |
atctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaacct |
475 |
Q |
| |
|
||||| ||||| |||||||||||| | ||||||||||||||||| |||||||||||||| ||| | || | ||||||||| | || ||||| ||||||| |
|
|
| T |
2331210 |
atctagatccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaacct |
2331111 |
T |
|
| Q |
476 |
tccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaa |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| || ||||||||||| |
|
|
| T |
2331110 |
tccaatcgaaattccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaa |
2331017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 66 - 328
Target Start/End: Complemental strand, 2321932 - 2321687
Alignment:
| Q |
66 |
caaaataaaccaacttcaatattactacaacaaagatcatatatttt-tacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttat |
164 |
Q |
| |
|
||||||||| |||||| ||||||| | ||||| |||||||| |||| |||| |||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
2321932 |
caaaataaaacaactttgatattacaaaaacaa-gatcatattttttatacattgaaagtatcttgacttacaagaatgacagacat-gttttattttat |
2321835 |
T |
|
| Q |
165 |
acaggaaacaagatatataagaaagaacaataacatatgtgaaggcatatatatgtatgcataagggatcattatatgaaacaaaatcccaccatatgac |
264 |
Q |
| |
|
||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2321834 |
acaagaaacaagatatataagaa---------------gt-aaggcatatgaatgtatgcataagggatcattgtatgaaacaaaatccgaccatatgag |
2321751 |
T |
|
| Q |
265 |
aaatccacatataatactcccctgctgtgttatgacattctcaggcagagaatctagggtggtt |
328 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
2321750 |
aaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggtt |
2321687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 2304046 - 2303983
Alignment:
| Q |
265 |
aaatccacatataatactcccctgctgtgttatgacattctcaggcagagaatctagggtggtt |
328 |
Q |
| |
|
|||||||||||||||| | | ||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
2304046 |
aaatccacatataatatttctttgctgtgttatgacattctcaagcagagaatctagagtggtt |
2303983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 2322009 - 2321971
Alignment:
| Q |
43 |
accgccaagaccaaacagattaacaaaataaaccaactt |
81 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2322009 |
accgtcaagaccaaacagattaacaaaataaaccaactt |
2321971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 328
Target Start/End: Complemental strand, 2327685 - 2327575
Alignment:
| Q |
215 |
atatgtatgcataagggatcattatatgaaacaaaatcccacc-atatgacaaatccacatataatactcccctgctgtgttatgacattctcaggcaga |
313 |
Q |
| |
|
|||||||||||||| ||||| || |||||| ||||||| ||| || ||||||||| |||||||||| ||| |||||||||||||||| || | ||| |
|
|
| T |
2327685 |
atatgtatgcataatggatcgttgtatgaagcaaaatcttaccaatgtgacaaatctacatataatattcc---gctgtgttatgacattgccaag-aga |
2327590 |
T |
|
| Q |
314 |
gaatctagggtggtt |
328 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
2327589 |
gaatctaggatggtt |
2327575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 42
Target Start/End: Complemental strand, 2322107 - 2322076
Alignment:
| Q |
11 |
cacagatgtttagggaggaaacataatctata |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2322107 |
cacagatgtttagggaggaaacataatctata |
2322076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 2331388 - 2331305
Alignment:
| Q |
215 |
atatgtatgcataagggatcattatatgaaacaaaatcccaccatatgacaaatccacatataatactcccctgctgtgttatg |
298 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| |||||| |||||||| | ||||| |||||||||||| |||| |
|
|
| T |
2331388 |
atatgtatgcataagtgatcatttgatgaaacaaaatcacaccatcggacaaatctgcggataatcttcccctgctgtgatatg |
2331305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 382 - 570
Target Start/End: Complemental strand, 41127519 - 41127328
Alignment:
| Q |
382 |
atcctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccg---ccctctggaaccttcc |
478 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||| |||||||| | |||||| ||||||||||| || |||||| ||| ||||| |
|
|
| T |
41127519 |
atcctaggagaaatatgaacttgcagtggatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctctagaatcttcc |
41127420 |
T |
|
| Q |
479 |
aatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaac |
570 |
Q |
| |
|
||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| || ||| |||||||| |
|
|
| T |
41127419 |
aattaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactccaaac |
41127328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 457
Target Start/End: Complemental strand, 26507131 - 26507056
Alignment:
| Q |
382 |
atcctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacat |
457 |
Q |
| |
|
||||||||||| || ||| ||| |||||||| ||||||||||||||| ||||| ||| |||| | ||||||||||| |
|
|
| T |
26507131 |
atcctaggagatatttgagcttccaatggatatttcatcaccatagtaaattcctgtttttctgacaaatcaacat |
26507056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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