View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_8 (Length: 580)
Name: NF10977_low_8
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 9 - 563
Target Start/End: Original strand, 7333037 - 7333591
Alignment:
| Q |
9 |
agcaaaggtctaatgagaactgacaactagattagctactcagaaaagtgcatttgctaaaaacaaagtgtcacacatgcagatctttttggagcaatga |
108 |
Q |
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| T |
7333037 |
agcaaaggtctaatgagaactgacaactagattagctactcagaaaagtgcatttgctaaaaacaaagtgtcacacatgcagatctttttggagcaatga |
7333136 |
T |
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| Q |
109 |
acacgaacattggaaatagtaaggtgaggttcttcaggaaaaggtgaatgtgcatagaactttatgttagtaaattcaaagtttgggcaagnnnnnnnnn |
208 |
Q |
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| T |
7333137 |
acacgaacattggaaatagtaaggtgaggttcttcaggaaaaggtgaatgtgcatagaactttatgttagtaaattcaaagtttgggcaagaaaaaataa |
7333236 |
T |
|
| Q |
209 |
nnnnnnnntttactcggtaactgtggttttggttcagttcagcatggaaaaccaaactggtttgcaagttgaactctatcaaatcaaaccagttgagaat |
308 |
Q |
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| T |
7333237 |
atgaaaaatttactcggtaactgtggttttggttcagttcagcatggaaaaccaaactggtttgcaagttgaactctatcaaatcaaaccagttgagaat |
7333336 |
T |
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| Q |
309 |
caacccaattcggaccaattctgattgatgcaccatgtttcgtgttttacaaccgaactttaaaatgaattttgttttttcttatatatctagaaaatga |
408 |
Q |
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| T |
7333337 |
caacccaattcggaccgattctgattgatgcaccatgtttcgtgttttacaaccgaactttaaaatgaattttgttttttcttatatatctagaaaatga |
7333436 |
T |
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| Q |
409 |
tagaaaccgaaaacttaagtatcagtagaatagagattttattgatggaagtatgagctaaaagctctgacagcaacaaaagaattaacaaagggaaata |
508 |
Q |
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| T |
7333437 |
tagaaaccgaaaacttaagtatcagtagaatagagattttattgatggaagtatgagctaaaagctctgacagcaacaaaagaattaacaaagggaaata |
7333536 |
T |
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| Q |
509 |
ccagagtctatgactcctacccgagataagtctccactccctatcacctcattac |
563 |
Q |
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| T |
7333537 |
ccagagtctatgactcctacccgagataagtctccactccctatcacctcattac |
7333591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 2643631 - 2643752
Alignment:
| Q |
79 |
tcacacatgcaga-tctttttggagcaatgaacacgaacattggaaatagtaaggtgaggttcttcaggaaaaggtgaatgtgcatagaactttatgtta |
177 |
Q |
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||||||||||||| ||||| ||||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
2643631 |
tcacacatgcagaatctttacggagcaatgaacatgaacattgaaaacagtagggtgaggttcttcaggaaaaggtgaatgagcatagaactttacgtta |
2643730 |
T |
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| Q |
178 |
gtaaattcaaagtttgggcaag |
199 |
Q |
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|||| |||||||||||||||| |
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| T |
2643731 |
ctaaactcaaagtttgggcaag |
2643752 |
T |
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