View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10977_low_9 (Length: 575)
Name: NF10977_low_9
Description: NF10977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10977_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 52798572 - 52799122
Alignment:
| Q |
1 |
aatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagctatctacttgctatggtgtgtgatgaaacaatatcagat |
100 |
Q |
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| T |
52798572 |
aatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagctatctacttgctatagcgtgtgatgaaacgatatcagat |
52798671 |
T |
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| Q |
101 |
ggacnnnnnnnnctacacttagtttttattaatatggagaaaacaattgatagagcatcaagagagatttgtggaaaatcatatagaagaaagaggttgg |
200 |
Q |
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| T |
52798672 |
ggacaaaaaatactacacttagtttttattaatatggagaaaacaattgatagatcaccaagagagatttgtggaaaatcatatagaagaaagaggttag |
52798771 |
T |
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| Q |
201 |
tgttgatatttatttattaaactacaaatcaataagtggaaataagtacaaatgatacttgttatgttacgggtataaagagagccgactcaattattct |
300 |
Q |
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| T |
52798772 |
ggttgatatttatttattaaactacaaatcaataagtggaaataagtacaaatgatacttgttatgttacgggtataaagagggccgactcaattattct |
52798871 |
T |
|
| Q |
301 |
atgtgttgtccaataacaaagctcattaaaaatatggcatgaatgtacaataaaggaatcaggtccaagtccaccaagacgaccacctcgtctcttagca |
400 |
Q |
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| T |
52798872 |
atgtgttgtccaataacaaagctcattaaaaatatggcatgaatgtacaataaaggaatcaggtccaagtccaccaaggcgaccacctcgtctcttagca |
52798971 |
T |
|
| Q |
401 |
tgatgcaacacaaaatcttcctaaaattggatagccatcttattcccaagcttcctaaaaatcgaaatttggagtgaaccgccttcacaatccttcatca |
500 |
Q |
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| T |
52798972 |
tgatgcaacacaaaatcttcctaaaattggatagtcatcttattcccaagcttcctaaaaattaaaatttggagtgaaccgccttcacaatccttcacca |
52799071 |
T |
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| Q |
501 |
ca--cacaacttaagtccttccaccaacgcgatacaattcattttacaaaa |
549 |
Q |
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| T |
52799072 |
cacccacaacttaagtccttccaccaacacggcacaattcattttacaaaa |
52799122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 50630495 - 50630446
Alignment:
| Q |
21 |
aaccaatttgattttatgttagagagatcgaccatggaagctatctactt |
70 |
Q |
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| T |
50630495 |
aaccaatttgattttatgcttgcgaggtcgaccatggaagcaatctactt |
50630446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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