View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10978_high_1 (Length: 575)
Name: NF10978_high_1
Description: NF10978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10978_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 201 - 559
Target Start/End: Original strand, 34646783 - 34647141
Alignment:
| Q |
201 |
ttccagtgggattcgaactctgtccttttaagttataaagtcaaaccctaaccactgatctaaaaccatttatttggatttaaaagattggacaaataaa |
300 |
Q |
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| T |
34646783 |
ttccagtgggattcgaactctgtccttttaagttataaagtcaaaccctaaccactgatctgaaaccatttatttggatttaaaagattggacaaataaa |
34646882 |
T |
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| Q |
301 |
gtagtcttcgcgacatcaccacatacaagtagaaaatgacattctaagaatgggactttattgtatttaaattagtttttgatcttgaggttcatagtgt |
400 |
Q |
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| T |
34646883 |
gtagtcttcgcgacatcaccacatacaagtagaaaatgacattctaagaatgggactttattgtatttaaattagtttttgatcttgaggttcatagtgt |
34646982 |
T |
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| Q |
401 |
aatcaaatacagtaagtaaactaaagaaaaatttaaaatatgagagagaggttaagaaaccagttcatagatgaggcatccaacagtgatggtccaaaat |
500 |
Q |
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| T |
34646983 |
aatcaaatacagtaagtaaactaaagaaaaatttaaaatatgagagagaggttaagaaaccagttcatagatgaggcatccaacagtgatggtccaaaat |
34647082 |
T |
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| Q |
501 |
cttccagcaaatgagtctgcaagtagagccccaataagaggggtgaagctagatgttcc |
559 |
Q |
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| T |
34647083 |
cttccagcaaatgagtctgcaagtaaagccccaataagaggggtgaagctagatgttcc |
34647141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 34646550 - 34646751
Alignment:
| Q |
1 |
agtggtaataattgtgaagatgtcgcttctttgcaatttacttgtgttggacatggtggaggacggaaatgtggtagtatagttgataccgtaatactaa |
100 |
Q |
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| T |
34646550 |
agtggtaataattgtgaagatgtggcttctttgcaatttacttgtgttggacatggtggaggacggaaatgtggtagtatagttgataccgtaatactaa |
34646649 |
T |
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| Q |
101 |
tcaatccctgtttcaagcaaaataacatggtaacttgattaacaagtaatgcaatactatgtagtattaaaacgaaaacactaatgtttcaaatcattta |
200 |
Q |
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| T |
34646650 |
tcaatccctgtttcaagcaaaataacatggtaacttgattaacaagtaatgcaatactatgtagtattaaaacgaaaacactaatgtttcaaatcattta |
34646749 |
T |
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| Q |
201 |
tt |
202 |
Q |
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|| |
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| T |
34646750 |
tt |
34646751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 34661036 - 34661090
Alignment:
| Q |
34 |
caatttacttgtgttggacatggtggaggacggaaatgtggtagtatagttgata |
88 |
Q |
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| T |
34661036 |
caattcacttgagttggacatggtggaggacgcatgtgtgggagtatagttgata |
34661090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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