View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10978_high_4 (Length: 379)
Name: NF10978_high_4
Description: NF10978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10978_high_4 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 8455256 - 8455609
Alignment:
| Q |
19 |
atgctcgactcatccacgagagctgtagatgacaacctttgtgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcccaatccca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8455256 |
atgctcgactcatccacgagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcccaatctca |
8455355 |
T |
|
| Q |
119 |
actttttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagattcaaatggatttctagttaaagctgaaaccatgcccaataa |
218 |
Q |
| |
|
||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
8455356 |
actctttccttttctttgcaagaaattctagtttatccagttgttcattgagcctagattcaaatggatttctagataaagctgaaaccaagcccaataa |
8455455 |
T |
|
| Q |
219 |
attggtggtaagtggttcagattcagctttcagattatttagcattgcatcggtagaaatctcatctaatagttggtctgcttcataaacaacatgttta |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455456 |
attggtggtaagtggttcagattctgctttcaggttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgttta |
8455555 |
T |
|
| Q |
319 |
agttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct |
372 |
Q |
| |
|
|| |||||||||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
8455556 |
agatcatcaagccacttcttcacatatttgttttggtactgctttatctctgct |
8455609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 8590331 - 8590684
Alignment:
| Q |
19 |
atgctcgactcatccacgagagctgtagatgacaacctttgtgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcccaatccca |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
8590331 |
atgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcgttactagcacagggaccttctcccaatccca |
8590430 |
T |
|
| Q |
119 |
actttttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagattcaaatggatttctagttaaagctgaaaccatgcccaataa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
8590431 |
actttttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctggtttcaaatggatttgtagttaaagctgaaaccaagcccaataa |
8590530 |
T |
|
| Q |
219 |
attggtggtaagtggttcagattcagctttcagattatttagcattgcatcggtagaaatctcatctaatagttggtctgcttcataaacaacatgttta |
318 |
Q |
| |
|
|||| || ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590531 |
attgctgctaagtggttcagatttagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgttta |
8590630 |
T |
|
| Q |
319 |
agttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct |
372 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
8590631 |
agttcatcaagccacttcttcacatatttgcttcggtactgctttatctctgct |
8590684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 6736592 - 6736945
Alignment:
| Q |
19 |
atgctcgactcatccacgagagctgtagatgacaacctttgtgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcccaatccca |
118 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |
|
|
| T |
6736592 |
atgcttgactcatccaggagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattactagcactaggaccttctcccaatctca |
6736691 |
T |
|
| Q |
119 |
actttttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagattcaaatggatttctagttaaagctgaaaccatgcccaataa |
218 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
6736692 |
aatctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaaagctgaaaccaagcccaataa |
6736791 |
T |
|
| Q |
219 |
attggtggtaagtggttcagattcagctttcagattatttagcattgcatcggtagaaatctcatctaatagttggtctgcttcataaacaacatgttta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
6736792 |
attggtggtaagtggttcagattcagctttcaccttatttagcattgcatcagtagaaatctcatccaatagttggtctgcttcataaagaacatgttta |
6736891 |
T |
|
| Q |
319 |
agttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct |
372 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
6736892 |
agttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct |
6736945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 6479409 - 6479056
Alignment:
| Q |
19 |
atgctcgactcatccacgagagctgtagatgacaacctttgtgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcccaatccca |
118 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
6479409 |
atgctggactcatccacgagagccgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcactgggaccttctgccaatccca |
6479310 |
T |
|
| Q |
119 |
actttttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagattcaaatggatttctagttaaagctgaaaccatgcccaataa |
218 |
Q |
| |
|
|| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
6479309 |
acacctacttttgcattgcaagaaattctagtttatccagttgttcattgagcctagattcaaatggatttgtagttaaagctgaaaccacgcccaataa |
6479210 |
T |
|
| Q |
219 |
attggtggtaagtggttcagattcagctttcagattatttagcattgcatcggtagaaatctcatctaatagttggtctgcttcataaacaacatgttta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6479209 |
attggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagatatctcatctaatagttggtctgcttcataaacaacatgttta |
6479110 |
T |
|
| Q |
319 |
agttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct |
372 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
6479109 |
agtttatcaagccacttcttcacatatatgatttggtactgctttatctctgct |
6479056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 6553865 - 6553512
Alignment:
| Q |
19 |
atgctcgactcatccacgagagctgtagatgacaacctttgtgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcccaatccca |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |
|
|
| T |
6553865 |
atgcttgactcatccacgagagctgtagacgacaacctttttgaaggtttccaactgactaagccttcattactagcactaggaccttctcccaatctca |
6553766 |
T |
|
| Q |
119 |
actttttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagattcaaatggatttctagttaaagctgaaaccatgcccaataa |
218 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |||||||| |
|
|
| T |
6553765 |
aatctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctacattcaaatggatttgtagttaaagctgaaacgaaacccaataa |
6553666 |
T |
|
| Q |
219 |
attggtggtaagtggttcagattcagctttcagattatttagcattgcatcggtagaaatctcatctaatagttggtctgcttcataaacaacatgttta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6553665 |
attggtggtaagtggttcagattcagctttttgcttatttatcattgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgttta |
6553566 |
T |
|
| Q |
319 |
agttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct |
372 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
6553565 |
agttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct |
6553512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 25 - 343
Target Start/End: Original strand, 6947877 - 6948195
Alignment:
| Q |
25 |
gactcatccacgagagctgtagatgacaacctttgtgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcccaatcccaactttt |
124 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| || |
|
|
| T |
6947877 |
gactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgcaaggactttctcccaatcccaactctt |
6947976 |
T |
|
| Q |
125 |
tcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagattcaaatggatttctagttaaagctgaaaccatgcccaataaattggt |
224 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
6947977 |
tctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaaagctgaaaccaagcccaataaattggt |
6948076 |
T |
|
| Q |
225 |
ggtaagtggttcagattcagctttcagattatttagcattgcatcggtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttca |
324 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
6948077 |
ggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtctgcctcatagacaacatgtttaagttca |
6948176 |
T |
|
| Q |
325 |
tcaagccacttcttcacat |
343 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6948177 |
tcaagccacttcttcacat |
6948195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 25 - 372
Target Start/End: Complemental strand, 6519583 - 6519236
Alignment:
| Q |
25 |
gactcatccacgagagctgtagatgacaacctttgtgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcccaatcccaactttt |
124 |
Q |
| |
|
||||||||||| |||| |||||||||||| | || |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| | ||| |
|
|
| T |
6519583 |
gactcatccacaagagatgtagatgacaatcgttttgaaggtttccaactgactaagccttcattactagcacaaggaccaacttccaatcccagccttt |
6519484 |
T |
|
| Q |
125 |
tcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagattcaaatggatttctagttaaagctgaaaccatgcccaataaattggt |
224 |
Q |
| |
|
|| |||| | ||||||| ||||||| | |||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
6519483 |
tcgtttgttgtgcaagagattctagtgtctccagtagtttattgagcctagattcaaatggatttccagttaaagctgaaacccagccaaataaattggt |
6519384 |
T |
|
| Q |
225 |
ggtaagtggttcagattcagctttcagattatttagcattgcatcggtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttca |
324 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6519383 |
ggtaagtggttcagattcagctttcaacttatatatcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttca |
6519284 |
T |
|
| Q |
325 |
tcaagccacttcttcacatatatgctttcgtactgctttatctctgct |
372 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||| | ||||||| |
|
|
| T |
6519283 |
tcaagccacttcttcacatatttgttttggtactgcttcagctctgct |
6519236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 360
Target Start/End: Original strand, 5281466 - 5281594
Alignment:
| Q |
232 |
ggttcagattcagctttcagattatttagcattgcatcggtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagcc |
331 |
Q |
| |
|
|||||||||||| ||||||| ||||| || ||| || |||| ||||||||| || | ||||||||| ||||| ||| |||||||||| |||||||||| |
|
|
| T |
5281466 |
ggttcagattcatctttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagcc |
5281565 |
T |
|
| Q |
332 |
acttcttcacatatatgctttcgtactgc |
360 |
Q |
| |
|
||||||| |||||| |||||| ||||||| |
|
|
| T |
5281566 |
acttctttacatatgtgcttttgtactgc |
5281594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 8480045 - 8479979
Alignment:
| Q |
273 |
agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttc |
339 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
8480045 |
agaaatctcatgtaatagttggtttgcttcataaacaacatgtttaagttcatcaagtcaattcttc |
8479979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 368
Target Start/End: Original strand, 5299587 - 5299679
Alignment:
| Q |
276 |
aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctc |
368 |
Q |
| |
|
||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| ||| ||||| ||| |||||| |||| |
|
|
| T |
5299587 |
aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctc |
5299679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 368
Target Start/End: Original strand, 5250981 - 5251117
Alignment:
| Q |
232 |
ggttcagattcagctttcagattatttagcattgcatcggtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagcc |
331 |
Q |
| |
|
|||| ||||||||||||||| || || || |||||| || | |||||||||||| || ||||| | ||||| || ||||||||| |||||||||| |
|
|
| T |
5250981 |
ggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagcc |
5251080 |
T |
|
| Q |
332 |
acttcttcacatatatgctttcgtactgctttatctc |
368 |
Q |
| |
|
|||||||||| || ||||||| ||| ||||| ||||| |
|
|
| T |
5251081 |
acttcttcacgtacatgctttggtattgcttcatctc |
5251117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 4388080 - 4388024
Alignment:
| Q |
312 |
atgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctc |
368 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||||||| ||||||||| ||||| |
|
|
| T |
4388080 |
atgtttaagatcatcaagccacttcttcacggacatgctttggtactgcttcatctc |
4388024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 5268948 - 5269004
Alignment:
| Q |
312 |
atgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctc |
368 |
Q |
| |
|
||||||||| |||||||||||||||||||| || ||||||| | ||||||| ||||| |
|
|
| T |
5268948 |
atgtttaagatcatcaagccacttcttcacgtacatgctttggaactgcttcatctc |
5269004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 6917938 - 6918038
Alignment:
| Q |
271 |
gtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctctg |
370 |
Q |
| |
|
||||||||| |||||| ||||||||| ||||||| || | ||||| || ||||||||||| |||||||| | | | ||| ||||||||||| ||||| |
|
|
| T |
6917938 |
gtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcacgtctcggttttggtactgctttacctctg |
6918037 |
T |
|
| Q |
371 |
c |
371 |
Q |
| |
|
| |
|
|
| T |
6918038 |
c |
6918038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 6904 - 6551
Alignment:
| Q |
19 |
atgctcgactcatccacgagagctgtagatgacaacctttgtgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcccaatccca |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |
|
|
| T |
6904 |
atgcttgactcatccacgagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattactagcactaggaccttctcccaatctca |
6805 |
T |
|
| Q |
119 |
actttttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagattcaaatggatttctagttaaagctgaaaccatgcccaataa |
218 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
6804 |
aatctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctacattcaaatggatttgtagttaaagctgaaaccaaacccaataa |
6705 |
T |
|
| Q |
219 |
attggtggtaagtggttcagattcagctttcagattatttagcattgcatcggtagaaatctcatctaatagttggtctgcttcataaacaacatgttta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6704 |
attggtggtaagtggttcagattcagctttttgcttatttatcattgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgttta |
6605 |
T |
|
| Q |
319 |
agttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct |
372 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
6604 |
agttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct |
6551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 41068482 - 41068403
Alignment:
| Q |
291 |
ttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct |
372 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | || ||||||| |
|
|
| T |
41068482 |
ttggtctgcttca--aacaacatgtttaagttcatcaagccaattcttcacatatatgctttggtactgttatagctctgct |
41068403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 41068617 - 41068553
Alignment:
| Q |
74 |
tgactaagccttcattcctagcacaaggaccttctcccaatcccaactttttcttttgctttgca |
138 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41068617 |
tgactaagccttcattactagcgttaggaccttctcccaatcccaactctttcttttgctttgca |
41068553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 19936185 - 19936232
Alignment:
| Q |
273 |
agaaatctcatctaatagttggtctgcttcataaacaacatgtttaag |
320 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19936185 |
agaaatctcatgtaatagttggtttgcttcataaacaacatgtttaag |
19936232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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