View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10978_low_2 (Length: 481)
Name: NF10978_low_2
Description: NF10978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10978_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 4975243 - 4975693
Alignment:
| Q |
18 |
ttactaacaaaaaataatctcacaattgaaaactatgcattattgaagaaaatgctaaaaggaagagagaataaccgaagggttgaaagagtagattatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4975243 |
ttactaacaaaaaataatctcacaattgaaaactatgcattattgaagaaaatactaaaaggaagagagaataaccgaagggttgaaagagtagattatg |
4975342 |
T |
|
| Q |
118 |
ggtttaatgatttatcaactgcttgcttaatattttatttaaggaagttatatcaaacatttattcataagttagaagacatctattctgatgctgagga |
217 |
Q |
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| T |
4975343 |
ggtttaatgatttatcaactgcttgcttaatattttatttaaggaagttatatcaaacatttattcataagttagaagacatctattctgatgctgagga |
4975442 |
T |
|
| Q |
218 |
ggtagagtaagatcaagacaatacaattattgttgagcaggatgaataaataactaaactaagggaaggtacatacatttttcaaataacatttttatgc |
317 |
Q |
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| T |
4975443 |
ggtagagtaagatcaagacaatacaattattgttgagcaggatgaataaataactaaactaagggaaggtacatacatttttcaaataacatttttatgc |
4975542 |
T |
|
| Q |
318 |
aatattcnnnnnnnnctcgacaattgtccataaagtccgactgaattgataataccgaaattgttaactgaacattttagttaaccgagttcaaactcaa |
417 |
Q |
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| T |
4975543 |
tatattcttttttttctcgacaattgtccataaaatccgactcaattgataataccgaaattgtaaactgaacattttagttaatcgagttcaaactcaa |
4975642 |
T |
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| Q |
418 |
aatctcccttttatgtgcgcaagtttttaaatagtgtttgctctttcatct |
468 |
Q |
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| T |
4975643 |
aatctcccttttatgtgtgcaagtttttaagtagtgtttgtcctttcatct |
4975693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 4993151 - 4993601
Alignment:
| Q |
18 |
ttactaacaaaaaataatctcacaattgaaaactatgcattattgaagaaaatgctaaaaggaagagagaataaccgaagggttgaaagagtagattatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993151 |
ttactaacaaaaaataatctcacaattgaaaactatgcattattgaagaaaatactaaaaggaagagagaataaccgaagggttgaaagagtagattatg |
4993250 |
T |
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| Q |
118 |
ggtttaatgatttatcaactgcttgcttaatattttatttaaggaagttatatcaaacatttattcataagttagaagacatctattctgatgctgagga |
217 |
Q |
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| T |
4993251 |
ggtttaatgatttatcaactgcttgcttaatattttatttaaggaagttatatcaaacatttattcataagttagaagacatctattctgatgctgagga |
4993350 |
T |
|
| Q |
218 |
ggtagagtaagatcaagacaatacaattattgttgagcaggatgaataaataactaaactaagggaaggtacatacatttttcaaataacatttttatgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993351 |
ggtagagtaagatcaagacaatacaattattgttgagcaggatgaataaataactaaactaagggaaggtacatacatttttcaaataacatttttatgc |
4993450 |
T |
|
| Q |
318 |
aatattcnnnnnnnnctcgacaattgtccataaagtccgactgaattgataataccgaaattgttaactgaacattttagttaaccgagttcaaactcaa |
417 |
Q |
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|||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
4993451 |
tatattcttttttttctcgacaattgtccataaaatccgactcaattgataataccgaaattgtaaactgaacattttagttaatcgagttcaaactcaa |
4993550 |
T |
|
| Q |
418 |
aatctcccttttatgtgcgcaagtttttaaatagtgtttgctctttcatct |
468 |
Q |
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||||||||||||||||| |||||||||||| ||||||||| ||||||||| |
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|
| T |
4993551 |
aatctcccttttatgtgtgcaagtttttaagtagtgtttgtcctttcatct |
4993601 |
T |
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