View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10978_low_4 (Length: 382)

Name: NF10978_low_4
Description: NF10978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10978_low_4
NF10978_low_4
[»] chr2 (3 HSPs)
chr2 (11-335)||(40087754-40088077)
chr2 (11-366)||(40061907-40062264)
chr2 (11-300)||(40080042-40080330)
[»] chr4 (2 HSPs)
chr4 (62-119)||(22013633-22013690)
chr4 (229-300)||(22013454-22013525)


Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 40087754 - 40088077
Alignment:
Q  11 gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcat 110  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40087754 gaacctgtgggtatttcgaaggatgatatattgtcaaagactggattacttgagcaaataaatatcacagctgatagaagtgactacttgtggtactcat 40087853  T
Q  111 taaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattcttttgaagcgttgatct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40087854 taaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattcttttgaagcgttgatct 40087953  T
Q  211 taaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaatttattcaca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40087954 taaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaa-ttattcaca 40088052  T
Q  311 aggatatggtttttatattttgaaa 335  Q
    |||||||||||||||||||||||||    
T  40088053 aggatatggtttttatattttgaaa 40088077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 40061907 - 40062264
Alignment:
Q  11 gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcat 110  Q
    |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  40061907 gaacctgtgggtatttcgaaggatgatatattttcaaaaactggattacttgagcaaataaatatcaccgctgatagaagtgactacttgtggtactcat 40062006  T
Q  111 taaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattcttttgaagcgttgatct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40062007 taaggtatacaagcctccaaatttgaaagatattttccctgaacgatgattctgtacttctcgataacacttctattatattcttttgaagcgttgatct 40062106  T
Q  211 taaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaatttattcaca 310  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||     
T  40062107 taaggatgatcttggttctcaaactgtacttcacattgaatcactcggccatgcccttcatgctttcgtaaacggaaagcttgcaggtaa-ttattcact 40062205  T
Q  311 agga---tatggtttttatattttgaaactctcaaagaccctgtgttattgaacctcaa 366  Q
    || |   ||||||| | || |||||||| ||||||||| ||||| |||||||| |||||    
T  40062206 agaattttatggttctaatgttttgaaagtctcaaagagcctgtattattgaaactcaa 40062264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 40080042 - 40080330
Alignment:
Q  11 gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || |||||||||||||    
T  40080042 gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaataccacagctgatagaagtgattatttgtggtactcat 40080141  T
Q  111 taaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattcttttgaagcgttgatct 210  Q
    ||||||| ||||||||||||||||||||||||||| |  |||| ||||||| ||||||||| |||||||||||| ||||||| |||| |||| |||||||    
T  40080142 taaggtacacaagcctccaaatttgaaagatatttgctttgaccgatgattatgtacttcttgataacacttctcttgtatt-ttttaaagccttgatct 40080240  T
Q  211 taaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaa 300  Q
    |  ||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  40080241 tgcggatgatcccggttctcaaactgtcctgcacattgaatcacttggccatgcccttcatgctttcataaacggcaagcttgctggtaa 40080330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 22013690 - 22013633
Alignment:
Q  62 gagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaaggtata 119  Q
    |||||||||||||  || |||||||||||||||||||| |||||||||||||||||||    
T  22013690 gagcaaataaacacgacggctgatagaagtgactacttatggtactcattaaggtata 22013633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 22013525 - 22013454
Alignment:
Q  229 tcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaa 300  Q
    |||| |||| |||||||||||||| || ||||||||||||||||||||  |||| || |||||||| |||||    
T  22013525 tcaacctgttcttcacattgaatcccttggccatgcccttcatgcttttgtaaatgggaagcttgctggtaa 22013454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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