View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10978_low_6 (Length: 360)
Name: NF10978_low_6
Description: NF10978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10978_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 4654177 - 4653962
Alignment:
| Q |
20 |
aggatgccatgactaatgatgcagaagccattactacaagtagtagtatcaatgtactccatcgcttttcagaagccatgactagaaaaattcactattt |
119 |
Q |
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| T |
4654177 |
aggatgccatgactaatgatgcagaagccattactacaagtagtagtatcaatgtactccatcgcttttcagaagccatgactaagaaaattcactattt |
4654078 |
T |
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| Q |
120 |
tcaatatattagctccatttatcaatggatttcaatggtgaatagttcttggcattattgctaacattttgttgtatatttatagttatttcaatagttg |
219 |
Q |
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| T |
4654077 |
tcaatatattagctccatttatcaatggatttcaatggtgaatagttcttagcattattgctaacattttgttgtatatttatagttatttcaatagttg |
4653978 |
T |
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| Q |
220 |
ttatctatactatatt |
235 |
Q |
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| T |
4653977 |
ttatctatactatatt |
4653962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 4653912 - 4653859
Alignment:
| Q |
296 |
gagggagaatcgaaattaagttccaaacttatctcttaaaatgagagatttcat |
349 |
Q |
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| T |
4653912 |
gagggagagtcgaaattaagttccaaacttatctctcaaaatgagagatttcat |
4653859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 2887783 - 2887730
Alignment:
| Q |
296 |
gagggagaatcgaaattaagttccaaacttatctcttaaaatgagagatttcat |
349 |
Q |
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| T |
2887783 |
gagggagagtcgaaattaagttccaaacttatctctgaggatgagagatatcat |
2887730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 8266971 - 8266931
Alignment:
| Q |
308 |
aaattaagttccaaacttatctcttaaaatgagagatttca |
348 |
Q |
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| T |
8266971 |
aaattaagttccaagcttatctctcaaaatgagagatttca |
8266931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 27046049 - 27046102
Alignment:
| Q |
296 |
gagggagaatcgaaattaagttccaaacttatctcttaaaatgagagatttcat |
349 |
Q |
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|||||||| ||||||||||| ||||| |||||||| || |||||||||||||| |
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| T |
27046049 |
gagggagagtcgaaattaagctccaagcttatctcctaggatgagagatttcat |
27046102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 23810209 - 23810165
Alignment:
| Q |
305 |
tcgaaattaagttccaaacttatctcttaaaatgagagatttcat |
349 |
Q |
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|||||||||||| |||| ||||| ||||| ||||||||||||||| |
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| T |
23810209 |
tcgaaattaagtcccaagcttatatcttagaatgagagatttcat |
23810165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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