View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10978_low_7 (Length: 309)

Name: NF10978_low_7
Description: NF10978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10978_low_7
NF10978_low_7
[»] chr6 (3 HSPs)
chr6 (34-293)||(5953972-5954231)
chr6 (86-280)||(24177545-24177739)
chr6 (198-244)||(4084396-4084442)
[»] chr2 (3 HSPs)
chr2 (86-276)||(33845720-33845910)
chr2 (86-280)||(22849361-22849553)
chr2 (86-148)||(26370434-26370496)
[»] chr4 (3 HSPs)
chr4 (86-277)||(48213340-48213531)
chr4 (86-277)||(46387928-46388120)
chr4 (86-280)||(54781687-54781881)
[»] scaffold0068 (1 HSPs)
scaffold0068 (86-274)||(5396-5583)
[»] chr5 (2 HSPs)
chr5 (86-274)||(21708327-21708514)
chr5 (90-244)||(593616-593770)
[»] scaffold0044 (1 HSPs)
scaffold0044 (86-277)||(10870-11061)
[»] chr3 (4 HSPs)
chr3 (86-280)||(13503155-13503349)
chr3 (86-232)||(28625586-28625732)
chr3 (90-172)||(27024107-27024189)
chr3 (90-127)||(17058850-17058887)
[»] chr8 (4 HSPs)
chr8 (86-280)||(13523179-13523373)
chr8 (86-280)||(13612714-13612908)
chr8 (198-232)||(96016-96050)
chr8 (198-232)||(10543853-10543887)
[»] scaffold0006 (1 HSPs)
scaffold0006 (86-280)||(203214-203408)
[»] chr7 (1 HSPs)
chr7 (86-280)||(21504850-21505044)
[»] chr1 (3 HSPs)
chr1 (90-244)||(33906709-33906863)
chr1 (90-234)||(32680012-32680156)
chr1 (85-126)||(35195348-35195389)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 34 - 293
Target Start/End: Original strand, 5953972 - 5954231
Alignment:
Q  34 tctaccaatatatgggagctaattgatgataaggctgctttagttaaactatttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaa 133  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||    
T  5953972 tctacaaatatttgggagctaattgatgataaggctgctttagttaaactatttgtctccgcacaaactcaacacgagaatttttataaaattgtcaaaa 5954071  T
Q  134 gagatatttacaattatcaattatgttcccgaactcagtgacttcattatgacgggaatgaaagctatcaactactctcttcgcatccatctcaaaatcc 233  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5954072 gagagatttacaattatcaattatgttcccgaactctgtgacttcattatgacgggaatgaaagctatcaactactctcttcgcatccatctcaaaatcc 5954171  T
Q  234 acggttcctaattgcagcaaatgagcccactccatagcagataaaagtcccaacgtttct 293  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  5954172 accgttcctaattgcagcaaatgagcccagtccatagcagataaaagtcccaacgcttct 5954231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 86 - 280
Target Start/End: Complemental strand, 24177739 - 24177545
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| ||||||||||||| |||||||||||||||||| | |||||||  ||||||||||  ||| || || ||  |||||||  | |||||||||    
T  24177739 ttgcctccgtacaaactcaacacaagagttttcataaaattgactaaagagagttttacaattagaaatgatatttccatactcagtagcatcattatga 24177640  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataaaag 280  Q
    | ||| |  | ||||||||||||||| || |||||||||||||| || || ||||| | ||||| ||||||| |||| |||||||||||||||||    
T  24177639 ctggagtttatgctatcaactactctttttgcatccatctcaaagtcaacagttcccagttgcaacaaatgaacccaatccatagcagataaaag 24177545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 4084442 - 4084396
Alignment:
Q  198 ctatcaactactctcttcgcatccatctcaaaatccacggttcctaa 244  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||    
T  4084442 ctatcaaccactctcttagcatccatctcaaaatccacgggtcctaa 4084396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 86 - 276
Target Start/End: Original strand, 33845720 - 33845910
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| |||||||||||||||||||||||||| ||||||| | |||||  ||||||||||||||||||||||||| ||||  || ||||| | |||    
T  33845720 ttgcctccgtacaaactcaacacgagagttttcatagaattgtctagagagagttttacaattatcaattatgttcccgtactctatggcttcactctga 33845819  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagata 276  Q
    || |||| |||||||||||| |||||||| ||||||||||| || ||||| |||||   ||||||||||||  |||| |||||||||||||    
T  33845820 cgagaattaaagctatcaaccactctctttgcatccatctcgaagtccactgttcccggttgcagcaaatgcacccaatccatagcagata 33845910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 280
Target Start/End: Complemental strand, 22849553 - 22849361
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| ||||||||||||| |||||||||||||||||| | |||||||  ||||||||||| ||| || || ||  |||  ||  | ||| |||||    
T  22849553 ttgcctccgtacaaactcaacacaagagttttcataaaattgactaaagagagttttacaattataaatgatatttccatactttgtagcatcagtatga 22849454  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataaaag 280  Q
    | |||||  | || |||||||||||| || |||||||||||||| || ||||||||   ||||| ||||||| |||| |||||||||||||||||    
T  22849453 ctggaatttatgccatcaactactctttttgcatccatctcaaagtcaacggttcc--cttgcaacaaatgaacccaatccatagcagataaaag 22849361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 26370496 - 26370434
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaatt 148  Q
    ||||||||||||||||||||||   |||||||||||| |||| | |||||||  |||||||||    
T  26370496 ttgcctccgcacaaactcaacagtcgagttttcataatattgcctaaagagagttttacaatt 26370434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 86 - 277
Target Start/End: Complemental strand, 48213531 - 48213340
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||| | |||||  ||||||||||||||||||||||||| |||| ||| ||||| | |||    
T  48213531 ttgcctccgtacaaactcgacacgagagttttcatagaattgtctagagagagttttacaattatcaattatgttcccgtactctgtggcttcactctga 48213432  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataa 277  Q
    || |||| |||||||||||| |||||||| ||||||||||| || ||||| ||||| | ||||||||||||  |||| |||| | |||||||    
T  48213431 cgagaattaaagctatcaaccactctctttgcatccatctcgaagtccactgttcccagttgcagcaaatgcacccaatccacaacagataa 48213340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 86 - 277
Target Start/End: Original strand, 46387928 - 46388120
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccg-aactcagtgacttcattatg 184  Q
    ||||||||  |||||||||||||||||||||||||| ||||||  | |||||  ||||||||||||||||||||||||| | ||| ||| ||||| ||||    
T  46387928 ttgcctccatacaaactcaacacgagagttttcatagaattgtttagagagagttttacaattatcaattatgttcccgtacctctgtggcttcactatg 46388027  T
Q  185 acgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataa 277  Q
    ||| |||| |||||||||||| | |||||| | ||||||||| || ||||| ||||| | |||||||||||   |||| ||||||||||||||    
T  46388028 acgagaattaaagctatcaaccaatctctttgtatccatctcgaagtccactgttcccagttgcagcaaatacacccaatccatagcagataa 46388120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 280
Target Start/End: Complemental strand, 54781881 - 54781687
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| |||||||||||||  ||||||||||||||||| | |||||||  ||||||||||  ||| || ||  |  |||| || || | | |||||    
T  54781881 ttgcctccgtacaaactcaacacatgagttttcataaaattggctaaagagagttttacaattagaaatgatatttacatactctgtaacattagtatga 54781782  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataaaag 280  Q
    | | |||  | ||||||||||||||||||||||| ||||||||| || || ||||| | ||||| ||||||| |||| |||||||||||||||||    
T  54781781 ctgaaatttatgctatcaactactctcttcgcattcatctcaaagtcaacagttcccagttgcaacaaatgaacccaatccatagcagataaaag 54781687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 274
Target Start/End: Original strand, 5396 - 5583
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||  |||||||||||| ||||||||||||| ||||||| | |||||  ||||||||||||||||||||||| | |||| ||| ||||| | |||    
T  5396 ttgcctccatacaaactcaacatgagagttttcatagaattgtctagagagagttttacaattatcaattatgttcc-gtactctgtggcttcactctga 5494  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcaga 274  Q
    || |||| |||||||||||| |||||||| ||||||||||| || ||||| ||||| ||||||||||||||  |||| |||||||||||    
T  5495 cgagaattaaagctatcaaccactctctttgcatccatctcgaagtccactgttcccaattgcagcaaatgcacccaatccatagcaga 5583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 274
Target Start/End: Complemental strand, 21708514 - 21708327
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||  |||||||||||| ||||||||||||| ||||||| | |||||  ||||||||||||||||||||||| | |||| ||| ||||| | |||    
T  21708514 ttgcctccatacaaactcaacatgagagttttcatagaattgtctagagagagttttacaattatcaattatgttcc-gtactctgtggcttcactctga 21708416  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcaga 274  Q
    || |||| |||||||||||| |||||||| ||||||||||| || ||||| ||||| ||||||||||||||  |||| |||||||||||    
T  21708415 cgagaattaaagctatcaaccactctctttgcatccatctcgaagtccactgttcccaattgcagcaaatgcacccaatccatagcaga 21708327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 593770 - 593616
Alignment:
Q  90 ctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatgacggg 189  Q
    |||||||||||||| ||||| |||||| ||||||| |  | | ||||| |||||||||  ||||| || ||||| || |||||||| ||   ||   |||    
T  593770 ctccgcacaaactcgacacgtgagtttacataaaaattgctacagagagatttacaatgttcaataatattcccaaattcagtgacatcgcaatttaggg 593671  T
Q  190 aatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaa 244  Q
    ||| ||||  |||||| |||||||||||||||| |||||||||||| | ||||||    
T  593670 aattaaagtcatcaaccactctcttcgcatccaactcaaaatccacaggtcctaa 593616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 277
Target Start/End: Complemental strand, 11061 - 10870
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| |||||||||||||||||||||||||| ||||||| | |||||  ||||||||||||||||||||||||| ||||  || ||||| | |||    
T  11061 ttgcctccgtacaaactcaacacgagagttttcatagaattgtctagagagagttttacaattatcaattatgttcccgtactctatggcttcactctga 10962  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataa 277  Q
    || |||| |||||||||||| |||||||| |||| |||||| || ||||| |||||   |||||||||||   |||| ||||||||| ||||    
T  10961 cgagaattaaagctatcaaccactctctttgcattcatctcgaagtccactgttcccggttgcagcaaattcccccaatccatagcatataa 10870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 86 - 280
Target Start/End: Complemental strand, 13503349 - 13503155
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| ||||||||||||| |||||||||||||||||| | |||||||  ||||||||||  ||| || || ||  |||| ||  | |||||||||    
T  13503349 ttgcctccgtacaaactcaacacaagagttttcataaaattgactaaagagagttttacaattagaaatgatatttccatactctgtagcatcattatga 13503250  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataaaag 280  Q
    | ||| |  | ||||||||||||||| || |||||||||||||| || || ||||| | ||||| ||||||| |||| |||||||||||||||||    
T  13503249 ctggagtttatgctatcaactactctttttgcatccatctcaaagtcaacagttcccagttgcaacaaatgaacccaatccatagcagataaaag 13503155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 28625586 - 28625732
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    |||||||||||||||||| ||| | | |||||||||||| |  | ||||||| |||||||||||||||| || ||||| ||   ||| || |||||        
T  28625586 ttgcctccgcacaaactcgacatgtgggttttcataaaaattcctaaagagagatttacaattatcaataatattcccaaatctagtaacatcattcgtt 28625685  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatc 232  Q
     ||||||||||||| |||||||||||||| |||||||||||||||||    
T  28625686 tgggaatgaaagctgtcaactactctcttagcatccatctcaaaatc 28625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 27024107 - 27024189
Alignment:
Q  90 ctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagt 172  Q
    |||||||||||||||||||  ||||||||||| || |  | |||||||  ||||||||||| ||| || ||||| ||||||||    
T  27024107 ctccgcacaaactcaacacttgagttttcatagaaattactaaagagagttttacaattattaatgatattcccaaactcagt 27024189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 17058850 - 17058887
Alignment:
Q  90 ctccgcacaaactcaacacgagagttttcataaaattg 127  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  17058850 ctccgcacaaactcaacactagagttttcatataattg 17058887  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 280
Target Start/End: Original strand, 13523179 - 13523373
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| ||||||||||||| ||||||| |||||||||| | |||||||  ||||||||||  ||| || || ||  |||| ||  | ||| |||||    
T  13523179 ttgcctccgtacaaactcaacacaagagtttacataaaattgactaaagagagttttacaattagaaatgatatttccatactctgtagcatcaatatga 13523278  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataaaag 280  Q
    | |||||  | ||||||||||||||| || |||||||||||||| || || ||||| | ||||| ||||||| |||| |||||||||||||||||    
T  13523279 ctggaatttatgctatcaactactctttttgcatccatctcaaagtcaacagttcccagttgcaacaaatgaacccaatccatagcagataaaag 13523373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 280
Target Start/End: Original strand, 13612714 - 13612908
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| ||||||||||||| ||||||| |||||||||| | |||||||  ||||||||||  ||| || || ||  |||| ||  | ||| |||||    
T  13612714 ttgcctccgtacaaactcaacacaagagtttccataaaattgactaaagagagttttacaattagaaatgatatttccatactctgtagcatcagtatga 13612813  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataaaag 280  Q
    | |||||    ||||||||||||||| || |||||||||||||| || || ||||| | ||||| ||||||| |||| |||||||||||||||||    
T  13612814 ctggaatttgtgctatcaactactctttttgcatccatctcaaagtcaacagttcccagttgcaacaaatgaacccaatccatagcagataaaag 13612908  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 96050 - 96016
Alignment:
Q  198 ctatcaactactctcttcgcatccatctcaaaatc 232  Q
    |||||||| ||||||||||||||||||||||||||    
T  96050 ctatcaaccactctcttcgcatccatctcaaaatc 96016  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 10543887 - 10543853
Alignment:
Q  198 ctatcaactactctcttcgcatccatctcaaaatc 232  Q
    |||||||| ||||||||||||||||||||||||||    
T  10543887 ctatcaaccactctcttcgcatccatctcaaaatc 10543853  T

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Target: scaffold0006 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 280
Target Start/End: Original strand, 203214 - 203408
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| ||||||||||||| |||||||||||||||||| | |||||||  ||||||||||  ||| || || ||  |||| ||  | |||||||||    
T  203214 ttgcctccgtacaaactcaacacaagagttttcataaaattgactaaagagagttttacaattagaaatgatatttccatactctgtagcatcattatga 203313  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataaaag 280  Q
    | ||| |  | ||||||||||||||| || |||||||||||||| || || ||| | | ||||| ||||||| |||| |||||| ||||||||||    
T  203314 ctggagtttatgctatcaactactctttttgcatccatctcaaagtcaacagtttccagttgcaacaaatgaacccaatccataacagataaaag 203408  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 280
Target Start/End: Complemental strand, 21505044 - 21504850
Alignment:
Q  86 ttgcctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatga 185  Q
    ||||||||| ||||||||||||| |||||||||||||||||| | |||||||  ||||||||||  ||| || || ||  |||| ||  | ||| |||||    
T  21505044 ttgcctccgtacaaactcaacacaagagttttcataaaattgactaaagagagttttacaattagaaatgatatttccatactctgtagcatcagtatga 21504945  T
Q  186 cgggaatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaattgcagcaaatgagcccactccatagcagataaaag 280  Q
    | |||||  | ||||||||||||||| || |||||||||||||| || || ||||| | ||||| ||||||| |||| |||| || |||||||||    
T  21504944 ctggaatttatgctatcaactactctttttgcatccatctcaaagtcaacagttcccagttgcaacaaatgaacccaatccagagaagataaaag 21504850  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 90 - 244
Target Start/End: Original strand, 33906709 - 33906863
Alignment:
Q  90 ctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatgacggg 189  Q
    |||||||||||||| ||||| |||||| ||||||| |  | | ||||| |||||||||  ||||| || ||||| || |||||||| |||  ||   |||    
T  33906709 ctccgcacaaactcgacacgtgagtttacataaaaattgctacagagagatttacaatgttcaataatattcccaaattcagtgacatcacaatttaggg 33906808  T
Q  190 aatgaaagctatcaactactctcttcgcatccatctcaaaatccacggttcctaa 244  Q
    ||| ||||| |||||| |||||||||||||||| |||||||||||| | ||||||    
T  33906809 aattaaagccatcaaccactctcttcgcatccaactcaaaatccacaggtcctaa 33906863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 234
Target Start/End: Original strand, 32680012 - 32680156
Alignment:
Q  90 ctccgcacaaactcaacacgagagttttcataaaattgtcgaaagagatatttacaattatcaattatgttcccgaactcagtgacttcattatgacggg 189  Q
    |||||||||||||| | ||| |||||| ||||||| |  | | ||||| |||||||||  ||||| || ||||| || | |||||| ||   ||   |||    
T  32680012 ctccgcacaaactcgaaacgtgagtttacataaaaattgctacagagagatttacaatgttcaataatattcccaaattaagtgacatcgcaatttaggg 32680111  T
Q  190 aatgaaagctatcaactactctcttcgcatccatctcaaaatcca 234  Q
    ||| ||||| |||||| |||||||||||||||| |||||||||||    
T  32680112 aattaaagccatcaaccactctcttcgcatccaactcaaaatcca 32680156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 35195389 - 35195348
Alignment:
Q  85 tttgcctccgcacaaactcaacacgagagttttcataaaatt 126  Q
    |||| ||||||| ||||||||||| |||||||||||||||||    
T  35195389 tttgtctccgcataaactcaacaccagagttttcataaaatt 35195348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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