View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10979_high_12 (Length: 298)
Name: NF10979_high_12
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10979_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 32348859 - 32348594
Alignment:
| Q |
20 |
cacttgagtctcttcttaaggaagtcaaacttgcatctaagcatgataacatgttaaagtatgatgagtttttaaaactcataaaagatttcaaggctga |
119 |
Q |
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| T |
32348859 |
cacttgagtctcttcttaaggaagtcaaacttgcatctaagcatgataacatgttaaagtatgatgagtttttaaaactcataaaagatttcaaggctga |
32348760 |
T |
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| Q |
120 |
aataattgatataagaggtgtccaagcaagagtgagggagctgcttcaaggatatccccaggtttaatattcagattcaacaccttcctcatcatgccaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32348759 |
aataattgatataagaggtgtccaagcaagagtgagggagctgcttcaaggatat--ccaggtttaatattcagattcaacaccttcctcatcattccaa |
32348662 |
T |
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| Q |
220 |
ctggttcgttcctactttttccattgcacttcacatatcttgatactatgtttctactatatgccttt |
287 |
Q |
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| T |
32348661 |
ctggttcgttcctactttttccattgcacttcacatatcttgatactatgtttctactatatgccttt |
32348594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 31263803 - 31264009
Alignment:
| Q |
20 |
cacttgagtctcttcttaaggaagtcaaacttgcatctaagcatgataacatgttaaagtatgatgagtttttaaaactcataaaagatttcaaggctga |
119 |
Q |
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| T |
31263803 |
cactggagtatcttgttaagggagtgaaacttgcatctcggtacgataacagcataaagtacgatgagtttttaaaactcataagagatttcaaggctgg |
31263902 |
T |
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| Q |
120 |
aataattgatataagaggtgtccaagcaagagtgagggagctgcttcaaggatatccccaggtttaatattcagattcaacaccttcctcatcatgccaa |
219 |
Q |
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| T |
31263903 |
aagaattgatatacgaggcgtccaatcaagggtgagggtgctgcttcaaaggcat--cagggtttattattcggattcaagaccttcctcatcatgccag |
31264000 |
T |
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| Q |
220 |
ctggttcgt |
228 |
Q |
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||||||||| |
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| T |
31264001 |
ctggttcgt |
31264009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 14961399 - 14961485
Alignment:
| Q |
83 |
atgagtttttaaaactcataaaagatttcaaggctgaaataattgatataagaggtgtccaagcaagagtgagggagctgcttcaagg |
170 |
Q |
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|||| ||||||||| |||||||||||||||||| | ||| ||||||||||||||||||| |||||||| | |||||||||| |||| |
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| T |
14961399 |
atgactttttaaaagtcataaaagatttcaaggat-aaagaattgatataagaggtgtcgctgcaagagtcaaggagctgcttaaagg |
14961485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 41183460 - 41183501
Alignment:
| Q |
216 |
ccaactggttcgttcctactttttccattgcacttcacatat |
257 |
Q |
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| T |
41183460 |
ccaactggttagttactactttttccattgcacttcacatat |
41183501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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