View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10979_high_4 (Length: 528)

Name: NF10979_high_4
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10979_high_4
NF10979_high_4
[»] chr1 (3 HSPs)
chr1 (19-388)||(29529010-29529379)
chr1 (84-153)||(28375694-28375763)
chr1 (88-153)||(395456-395522)
[»] chr4 (5 HSPs)
chr4 (67-173)||(14066284-14066390)
chr4 (88-153)||(53051475-53051540)
chr4 (88-153)||(1452393-1452459)
chr4 (266-345)||(14066417-14066497)
chr4 (88-148)||(748592-748653)
[»] chr2 (2 HSPs)
chr2 (74-156)||(17955702-17955784)
chr2 (191-253)||(17955639-17955701)
[»] chr8 (1 HSPs)
chr8 (84-153)||(41264118-41264187)
[»] chr7 (8 HSPs)
chr7 (84-153)||(31299702-31299771)
chr7 (84-153)||(42681197-42681266)
chr7 (88-153)||(42681345-42681410)
chr7 (88-153)||(18581954-18582020)
chr7 (88-153)||(19531554-19531620)
chr7 (88-153)||(18343913-18343979)
chr7 (88-153)||(18347442-18347508)
chr7 (96-148)||(18344821-18344874)
[»] chr5 (5 HSPs)
chr5 (84-153)||(34180902-34180971)
chr5 (88-153)||(4195753-4195818)
chr5 (79-153)||(6685886-6685961)
chr5 (88-153)||(10050881-10050947)
chr5 (88-148)||(9246611-9246672)
[»] chr3 (2 HSPs)
chr3 (88-154)||(30440643-30440709)
chr3 (88-153)||(45082754-45082820)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 29529010 - 29529379
Alignment:
Q  19 agttcccactaagaaccatgttttatcccactaaatatagtggaatacaaaaaattacattatcaccgactgtggggatcgaacccacgaccacgtggtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  29529010 agttcccactaagaaccatgttttatcccactaaatatagtggaatacaaaaaattacattatcgccgaccgtggggatcgaacccacgaccacgtggtt 29529109  T
Q  119 aaaagccacgcgctctaccactgagctaagtcggcataattggttttttgatgatgatattcttacttttatttgtgtagtaatgcaatatatttcttta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29529110 aaaagccacgcgctctaccactgagctaagtcggcataattggttctttgatgatgatattcttacttttatttgtgtagtaatgcaatatatttcttta 29529209  T
Q  219 tcattgactttaagatattaaaatgaaatcattattaactgcacatatatgctgattgctttgtagcacacatgacatgatttgtaaataaaactctaac 318  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29529210 tcattgactttaagatattaaaatgaaatcattattaactacacatatatgctgattgctttgtagcacacatgacatgatttgtaaataaaactctaac 29529309  T
Q  319 ataatttcttttaaatatccctccaacaatgaatcaaagatgcttacataattcttcaaactcatcctca 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29529310 ataatttcttttaaatatccctccaacaatgaatcaaagatgcttacataattcttcaaactcatcctca 29529379  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 28375694 - 28375763
Alignment:
Q  84 ccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28375694 ccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 28375763  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 395456 - 395522
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 153  Q
    ||||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||| ||||    
T  395456 ctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggc 395522  T

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Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 14066284 - 14066390
Alignment:
Q  67 aaaaaattacattatcaccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggcataattggttttt 166  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  14066284 aaaaaattacattatcgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggcataattcgttctt 14066383  T
Q  167 tgatgat 173  Q
    |||||||    
T  14066384 tgatgat 14066390  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 53051475 - 53051540
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53051475 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggc 53051540  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 1452393 - 1452459
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 153  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  1452393 ctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggc 1452459  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 14066417 - 14066497
Alignment:
Q  266 tatgctgattgctttgtagcacacatgacatgatttgtaaataaaactct-aacataatttcttttaaatatccctccaac 345  Q
    ||||| ||||| ||||||| |||||| ||||| |||||||| |||||||| |||| |||||||||||||||||||||||||    
T  14066417 tatgcagattgatttgtagtacacataacatggtttgtaaacaaaactcttaacacaatttcttttaaatatccctccaac 14066497  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 748653 - 748592
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaag 148  Q
    ||||||| ||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  748653 ctgtgggaatcaaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaag 748592  T

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Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 17955784 - 17955702
Alignment:
Q  74 tacattatcaccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggcata 156  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17955784 tacattatcgccgattgtggggatcaaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggcata 17955702  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 17955701 - 17955639
Alignment:
Q  191 ttgtgtagtaatgcaatatatttctttatcattgactttaagatattaaaatgaaatcattat 253  Q
    |||||||||| ||  |||||||||||||||||||||  |||| ||||||||||||||||||||    
T  17955701 ttgtgtagtattgtgatatatttctttatcattgaccataagctattaaaatgaaatcattat 17955639  T

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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 41264187 - 41264118
Alignment:
Q  84 ccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41264187 ccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 41264118  T

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Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 31299771 - 31299702
Alignment:
Q  84 ccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31299771 ccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 31299702  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 42681197 - 42681266
Alignment:
Q  84 ccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42681197 ccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 42681266  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 42681345 - 42681410
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42681345 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggc 42681410  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 18581954 - 18582020
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 153  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  18581954 ctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggc 18582020  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 19531620 - 19531554
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 153  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  19531620 ctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggc 19531554  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 18343979 - 18343913
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 153  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||    
T  18343979 ctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggc 18343913  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 18347508 - 18347442
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 153  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||    
T  18347508 ctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggc 18347442  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 18344874 - 18344821
Alignment:
Q  96 atcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaag 148  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  18344874 atcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaag 18344821  T

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Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 34180971 - 34180902
Alignment:
Q  84 ccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34180971 ccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 34180902  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 4195753 - 4195818
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4195753 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggc 4195818  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 6685886 - 6685961
Alignment:
Q  79 tatcaccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 153  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  6685886 tatcgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggc 6685961  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 10050881 - 10050947
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 153  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  10050881 ctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggc 10050947  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 9246672 - 9246611
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaag 148  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9246672 ctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaag 9246611  T

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Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 30440709 - 30440643
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggca 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30440709 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggca 30440643  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 45082754 - 45082820
Alignment:
Q  88 ctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 153  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||    
T  45082754 ctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggc 45082820  T

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