View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10979_high_5 (Length: 464)
Name: NF10979_high_5
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10979_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 8794448 - 8793997
Alignment:
| Q |
1 |
aactacttgggtgcttgaagaaaatatgtaagctatcctcatcattattattgctcaagagacaaatacaaggacaatatgcgtagggaattgtnnnnnn |
100 |
Q |
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| T |
8794448 |
aactacttgggtgcttgaagaaaatatgtaagctatcctcatcattattattgctcaagacacaaatacaaggacaatatgcgtagggaattgtaaaaaa |
8794349 |
T |
|
| Q |
101 |
nnnn-------tatgcatagggaaacacattttgcaaactcaccataacattctgacctgaatttattnnnnnnnctcaagtaacatcattaatcttata |
193 |
Q |
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| T |
8794348 |
aaaaaaaaaaatatgcatagggaaacacattttgcaaactcaccataacattctgacctgaatttattaataaaactcaagtaacatcattaatcttata |
8794249 |
T |
|
| Q |
194 |
acctgaatttgtaattaaagaggaattaaactaatcaaataaaaaatcatgtcggtatcaattatttagctggtagggaagggatgcaatgaaaaaacat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8794248 |
acctgaatttgtaattaaagaggaattaaactaatcaaataaaaaatcatgtcggtatcaattatttagctggtagggaagggatgcaatgaaaaaacat |
8794149 |
T |
|
| Q |
294 |
acatgaatgtaatgaactagcatgcatggtagaaattgaggaagtattagtagcacgtaagattgccaggacaaaacagagattcataatgcaattcctg |
393 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8794148 |
acatgaatgtaatgaactagcatacatgatagaaattgaggaagtactagtagtacgtaagattgccaggacaaaacagagattcataatgcaattcctg |
8794049 |
T |
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| Q |
394 |
ttcatacccaataaaaaattaagctgtttaattaaattataaatgaagcatt |
445 |
Q |
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| T |
8794048 |
ttcatacccaataaaaaattaagctgattaattaaattataaatgaagcatt |
8793997 |
T |
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