View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10979_low_1 (Length: 698)
Name: NF10979_low_1
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10979_low_1 |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 18 - 691
Target Start/End: Original strand, 37854700 - 37855373
Alignment:
| Q |
18 |
atatgaagccggacacgacactgacacatcgacacctgtaatagtttgagaaaatgaatttattcaatgtaagtcacgttcaatttgaagagttggtact |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37854700 |
atatgaagccggacacgacactgacacatcgacacctgtaatagtttgagaaaatgaatttattcaatgtaagtcacgttcaatttgaagagttggtact |
37854799 |
T |
|
| Q |
118 |
acatagctgtatatatgtaattattagtgaaaataggaaatataagcagaaaatgttttgccatgttaaacaagccttaatatttctgctgctgttttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37854800 |
acatagctgtatatatgtaattattagtgaaaataggaaatataagcagaaaatgttttgccatgttaaacaagccttaatatttctgctgctgttttca |
37854899 |
T |
|
| Q |
218 |
tcaaagctctattattgattaacatcttggtgatggaaatatcatgattatggaccttgttctcctcattctgatatctacatgttcaacttaagtacta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37854900 |
tcaaagctctattattgattaacatcttggtgatggaaatatcatgattatggaccttgttctcctcattctgatatctacatgttcaacttaagtacta |
37854999 |
T |
|
| Q |
318 |
tatccacttgacatgtctgacagtaaaaactacactctatatttttaaattgctgcttatttaaataagccttgcagaatatatagtcatactgtattac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37855000 |
tatccacttgacatgtctgacagtaaaaactacactctatatttttaaattgctgcttatttaaataagccttgcagaatatatagtcatactgtattac |
37855099 |
T |
|
| Q |
418 |
cattcaaaagaaaatttctgatttgtcaattgtcatgatgtttgttacccgagattctttgctttagcattgtctggaaactttggactgatttcctacc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37855100 |
cattcaaaagaaaatttctgatttgtcaattgtcatgatgtttgttacccgagattctttgctttagcattgtctggaaactttggactgatttcctacc |
37855199 |
T |
|
| Q |
518 |
cttcatttttatgcttatctttctcctgttagtcatatttgatttgctaaatcacttcgatcagtggttcctttctctagtcttaaaatatccaggatct |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37855200 |
cttcatttttatgcttatctttctcctgttagtcatatttgatttgctaaatcacttcaatcagtgattcctttctctagtcttaaaatatccaggatct |
37855299 |
T |
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| Q |
618 |
tcaaaagttgaatgtgattgaattttgtctgtctattgcaatcttctcaattccttttcacttatagtgtgttt |
691 |
Q |
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| T |
37855300 |
tcaaaagttgaatgtgattgaattttgtctgtctattgcaatcttctcaattccttttcacttatagtgtgttt |
37855373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 92 - 691
Target Start/End: Original strand, 145991 - 146588
Alignment:
| Q |
92 |
cacgttcaatttgaagagttggtactacatagctgtatatatgtaattattagtgaaaataggaaatataagcagaaaatgttttgccatgttaaacaag |
191 |
Q |
| |
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||||||||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||| || | |||| | ||||||||||||| |
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| T |
145991 |
cacgttcaatttgaagagttggtgcttcagag-tgtatatatgtaattattagtgaaaataggaaatataagccgagattgttgt--catgttaaacaag |
146087 |
T |
|
| Q |
192 |
ccttaatatttctgctgctgttttcatcaaagctctattattgat-taacatcttggtgatggaaatatcatgattatggaccttgttctcctcattctg |
290 |
Q |
| |
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|||| |||||||||||||||||||||||||| || ||||||||| ||||||||| ||||||||||||| | ||| ||||||||||||||| |||||| |
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| T |
146088 |
cctttatatttctgctgctgttttcatcaaacctaaattattgatctaacatcttagtgatggaaatattacgataatggaccttgttctc---attctg |
146184 |
T |
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| Q |
291 |
atatctacatgttcaacttaagtactatatccacttgacatgtctgacagtaaaaactacactctatatttttaaattgctgcttatttaaataagc--c |
388 |
Q |
| |
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|||||||||||| ||| | ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||| || ||||||||||||||| | |
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| T |
146185 |
atatctacatgtccaattaaagtactatatccacttcagatgtctagcagtaaaaactacactctatttgtttaaattactacttatttaaataagctac |
146284 |
T |
|
| Q |
389 |
ttgcagaatatata--------gtcatactgtattaccattcaaaagaaaatttctgatttgtcaattgtcatgatgtttgttacccgagattctttgct |
480 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
146285 |
ttgcagaatatatatatatatagtcatattgtagtaccattcgaaagaaaatttctgatttgt-------catgatgtttgttacccgagattctttgct |
146377 |
T |
|
| Q |
481 |
ttagcattgtctggaaactttggactgatttcctacccttcatttttatgcttatctttctcctgttagtcatatttgatttgctaaatcacttcgatca |
580 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||| || | |
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| T |
146378 |
ttagcattgtctggaaactttggactgatttcctacccttcatgtttatgcatatctttctcctgttagtcatatttgatttgtgaaataactttaatta |
146477 |
T |
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| Q |
581 |
gtggttcctttctctagtcttaaaatatccaggatcttcaaaagttgaatgtgattgaattttgtctgtctattgcaatcttctcaattccttttcactt |
680 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||| ||||||||||| |
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| T |
146478 |
gtgattcctttccttagtcttaaaatatccaggatcttcaaaagttgaatgtctttgaaatttgtctgtctattgctctcttgtcaataccttttcactt |
146577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 145900 - 145960
Alignment:
| Q |
28 |
ggacacgacactgacacatcgacacctgtaatagtttgagaaaatgaatttattcaatgta |
88 |
Q |
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| T |
145900 |
ggacacgacactgacatgtcaacaccggtaatagtttgagaaaataaattaattcaatgta |
145960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 30127746 - 30127692
Alignment:
| Q |
35 |
acactgacacatcgacacctgtaatagtttgagaaaatgaatttattcaatgtaa |
89 |
Q |
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||||||||| |||||||| ||| |||||||||||||||||| ||||| ||||||| |
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| T |
30127746 |
acactgacatatcgacacatgtgatagtttgagaaaatgaaattattgaatgtaa |
30127692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 56049855 - 56049899
Alignment:
| Q |
26 |
ccggacacgacactgacacatcgacacctgtaatagtttgagaaa |
70 |
Q |
| |
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||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
56049855 |
ccggacacgacacggacacatcgacaccgataataatttgagaaa |
56049899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 29970639 - 29970584
Alignment:
| Q |
18 |
atatgaagc-cggacacgacactgacacatcgacacctgtaatagtttgagaaaat |
72 |
Q |
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||||||||| |||||||||||||||||||| |||||| ||||| ||||||||||| |
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| T |
29970639 |
atatgaagcacggacacgacactgacacattgacaccgctaataatttgagaaaat |
29970584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 22385983 - 22386021
Alignment:
| Q |
35 |
acactgacacatcgacacctgtaatagtttgagaaaatg |
73 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||||| |
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| T |
22385983 |
acactgacagatcgacatctgtaatagtttgagaaaatg |
22386021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 26096804 - 26096759
Alignment:
| Q |
29 |
gacacgacactgacacatcgacacctgtaatagtttgagaaaatga |
74 |
Q |
| |
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||||||||||||||| |||||||||||| ||| ||| ||||||||| |
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| T |
26096804 |
gacacgacactgacaaatcgacacctgtgataatttaagaaaatga |
26096759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 49636904 - 49636844
Alignment:
| Q |
29 |
gacacgacactgacacatcgacacctgtaatagtttgagaaaatgaatttattcaatgtaa |
89 |
Q |
| |
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||||| ||||||||| |||||| | |||||| |||||||||||||||| ||| ||||||| |
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| T |
49636904 |
gacacaacactgacagatcgactctggtaataatttgagaaaatgaattaattgaatgtaa |
49636844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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