View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10979_low_10 (Length: 316)
Name: NF10979_low_10
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10979_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 21867984 - 21867680
Alignment:
| Q |
1 |
aatttcattataaaaattgtcaatgaaatttg---------aatgtgttctaatctttatattagtatagttgtttaatatagtaatatgaaatcaaccc |
91 |
Q |
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| T |
21867984 |
aatttaattataaaaattgtcaatgaaatttgtatgtgtttaatgtgttctaatctttatgttagtatagttgtttaata--gtaatatgaaatcaaccc |
21867887 |
T |
|
| Q |
92 |
acnnnnnnnnnnnnnnnnngagctgacatacacaaaagaacacatcatgggaagaaagaacacacatgggaagaagcaaaaacaagtgattcaaacaaaa |
191 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21867886 |
acaaaaaaaaaaaaaa---gagctgacatacacaaaagaacacatcatgggaagaaagaacacacatgggaagaagcaaaaacaagtgattcaaacaaaa |
21867790 |
T |
|
| Q |
192 |
acgaacataaagattagaacattaaacaatcgaagacaataacaaagaaaacaggacataaatgtgtatcaagtattttacctttcagagtagttatgcg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21867789 |
acgaacataaagattagaacattaaacaatcgaagacaataacaaagaaaagaggacataaatgtgtatcaagtattttacctttcagagtagttatgcg |
21867690 |
T |
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| Q |
292 |
atattctgtg |
301 |
Q |
| |
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|||||||||| |
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| T |
21867689 |
atattctgtg |
21867680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 21875711 - 21875590
Alignment:
| Q |
143 |
aagaaagaacacacatgggaagaagcaaaaacaagtgattcaaacaa----------aaacgaacataaagattagaacattaaacaatcgaagacaata |
232 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||||||| ||||||||||||| || | |
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| T |
21875711 |
aagaaagaacacacataggaagaagcaaaaacaagtgattcaaacaatgccaaacaaaaacaaacagaaagattagaacataaaacaatcgaagagaaca |
21875612 |
T |
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| Q |
233 |
acaaagaaaacaggacataaat |
254 |
Q |
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||||||||||| |||||||||| |
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| T |
21875611 |
acaaagaaaacgggacataaat |
21875590 |
T |
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