View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10979_low_11 (Length: 310)

Name: NF10979_low_11
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10979_low_11
NF10979_low_11
[»] chr7 (1 HSPs)
chr7 (17-310)||(38466321-38466614)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 38466614 - 38466321
Alignment:
Q  17 acctatctgtaaatcaaattcaaaacattatataatacaattacaaaagtagcagaaaagtaaaaagagaaaagaggttagttatttacagcggcaattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38466614 acctatctgtaaatcaaattcaaaacattatataatacaattacaaaagtagcagaaaagtaaaaagagaaaagaggttagttatttacagcggcaattg 38466515  T
Q  117 cagtgatagcagaggcaagtaaataaacataaaacggaataacaaatccttgttgttcagaagaagagggtttgttttgggcttcattttgagcccatgg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38466514 cagtgatagcagaggcaagtaaataaacataaaacggaataacaaatccttgttgttcagaagaagagggtttgttttgggcttcattttgagcccatgg 38466415  T
Q  217 aggaggttcttctgagtcaggcttagcccatgaagggattttttcatcggatttacttgactctgctgagcctttggtcactgccactgttaaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38466414 aggaggttcttctgagtcaggcttagcccatgaagggattttttcatcggatttacttgactctgctgagcctttggtcactgccactgttaaa 38466321  T

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