View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10979_low_13 (Length: 256)

Name: NF10979_low_13
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10979_low_13
NF10979_low_13
[»] chr2 (5 HSPs)
chr2 (19-252)||(21868060-21868293)
chr2 (19-80)||(21819142-21819203)
chr2 (171-251)||(21819303-21819383)
chr2 (19-79)||(21876106-21876166)
chr2 (171-233)||(21875943-21876005)
[»] chr4 (1 HSPs)
chr4 (30-102)||(44260210-44260282)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 21868293 - 21868060
Alignment:
Q  19 gaaatctcaccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatcttcggagttgtctcaatcttttgaagctcgtacgttttaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21868293 gaaatctcaccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatcttcggagttgtctcaatcttttgaagctcgtacgttttaa 21868194  T
Q  119 gaatggattgtacatcgatggagttttgcggccaagtcaatagtctaccatcaccatcatacacaattaagcaagcttcaactccaaatttgctagaaaa 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21868193 gaatggattgtacaacgatggagttttgcggccaagtcaatagtctaccatcaccatcatacacaattaagcaagcttcaactccaaatttgctagaaaa 21868094  T
Q  219 ttcagaaacttttttcaccaatcctttgcttctc 252  Q
    |||||||||||||||| ||||||| |||||||||    
T  21868093 ttcagaaacttttttcgccaatccattgcttctc 21868060  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 21819142 - 21819203
Alignment:
Q  19 gaaatctcaccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatctt 80  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21819142 gaaatctcaccttcaatcttattcttcttatttgcaaaatagtccttcacatcaaagatctt 21819203  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 21819303 - 21819383
Alignment:
Q  171 accatcatacacaattaagcaagcttcaactccaaatttgctagaaaattcagaaacttttttcaccaatcctttgcttct 251  Q
    ||||||||| ||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||  ||||||  ||||||||    
T  21819303 accatcatatacaatcaagcaagcttcaactccaaacttgttagaaaatttagaaactttttttgccaatctcttgcttct 21819383  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 21876166 - 21876106
Alignment:
Q  19 gaaatctcaccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatct 79  Q
    |||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  21876166 gaaatctcactttcaatcttattcttcttattttcaaaatagtctttcacatcaaagatct 21876106  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 21876005 - 21875943
Alignment:
Q  171 accatcatacacaattaagcaagcttcaactccaaatttgctagaaaattcagaaactttttt 233  Q
    ||||||||| ||||| |||||||||||||||||||| || ||||| || ||||||||||||||    
T  21876005 accatcatatacaatcaagcaagcttcaactccaaactttctagacaaatcagaaactttttt 21875943  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 44260282 - 44260210
Alignment:
Q  30 ttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatcttcggagttgtctcaatcttttga 102  Q
    ||||||||| |  ||||||||| |||| |||||||| |||||||| ||||| |||||| ||||||||||||||    
T  44260282 ttcaaccttttctttcttattttcaaagtagtccttgacatcaaatatcttaggagttttctcaatcttttga 44260210  T

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