View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10979_low_16 (Length: 240)

Name: NF10979_low_16
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10979_low_16
NF10979_low_16
[»] chr2 (9 HSPs)
chr2 (1-223)||(30068201-30068423)
chr2 (1-223)||(30790256-30790484)
chr2 (89-223)||(30251903-30252037)
chr2 (89-223)||(30171187-30171321)
chr2 (89-223)||(30279515-30279649)
chr2 (71-219)||(30029596-30029744)
chr2 (71-219)||(30223734-30223882)
chr2 (89-223)||(30147673-30147807)
chr2 (71-219)||(30103625-30103773)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30068423 - 30068201
Alignment:
Q  1 caccttttcatccattagggccatgggtaagcattgtgtaccttgataattttcaccacactttttgatatcaactgtcaataacacggaacagaaacta 100  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30068423 caccttttcatccattagggccacaggtaagcattgtgtaccttgataatcttcaccacactttttgatatcaactgtcaataacatggaacagaaacta 30068324  T
Q  101 atgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttatcagcatcatatgtttgctcagctatgattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30068323 atgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttatcagcatcatatgtttgctcagctatgattt 30068224  T
Q  201 ctgtaatcattttgcaatcagaa 223  Q
    |||||||||||||||||||||||    
T  30068223 ctgtaatcattttgcaatcagaa 30068201  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30790484 - 30790256
Alignment:
Q  1 caccttttcatccattagggccatgggtaagcattgtgtaccttgataattttcaccacactttttga------tatcaactgtcaataacacggaacag 94  Q
    |||||||||||| | ||||||||  |||| ||| |||||||| | || || ||||||| |||||||||      ||||| || |||||  || |||||||    
T  30790484 caccttttcatcaactagggccacaggtatgcactgtgtaccatcattatattcaccaaactttttgagacacttatcagctatcaatggcatggaacag 30790385  T
Q  95 aaactaatgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttatcagcatcatatgtttgctcagcta 194  Q
    |||||||||||||||||||| ||||||||| ||| |||||  |||||  ||||||||||||| ||||||||||||||||| ||| || ||||||||||||    
T  30790384 aaactaatgagactaggcaaattctcaagttcaagagaacctaacttggggaacataatcttgtcgatttctttatcagcctcagatttttgctcagcta 30790285  T
Q  195 tgatttctgtaatcattttgcaatcagaa 223  Q
    ||||||||||||||||||  |||||||||    
T  30790284 tgatttctgtaatcatttcacaatcagaa 30790256  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 30252037 - 30251903
Alignment:
Q  89 gaacagaaactaatgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttatcagcatcatatgtttgct 188  Q
    ||||||||||||||||||||||| || | ||||||| ||| ||||| ||||||  |||||||||| || || |||||||||||||| ||| |||||||||    
T  30252037 gaacagaaactaatgagactaggtaaatgctcaagttcaagagaacacaacttggggaacataatattgtcaatttctttatcagcctcagatgtttgct 30251938  T
Q  189 cagctatgatttctgtaatcattttgcaatcagaa 223  Q
    || | |||||||| |||||||||||||| ||||||    
T  30251937 caacaatgatttccgtaatcattttgcagtcagaa 30251903  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 30171321 - 30171187
Alignment:
Q  89 gaacagaaactaatgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttatcagcatcatatgtttgct 188  Q
    |||||||||||||||||||  |||||    |||||| ||| ||||||||| ||| ||||||||||||  | || ||||||||| || ||| || |||||     
T  30171321 gaacagaaactaatgagacatggcaaacgttcaagttcaagagaacgcaatttagggaacataatctggttgaattctttatcggcttcagatttttgca 30171222  T
Q  189 cagctatgatttctgtaatcattttgcaatcagaa 223  Q
    |||||| ||||||||||||||||||||||||||||    
T  30171221 cagctacgatttctgtaatcattttgcaatcagaa 30171187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 30279649 - 30279515
Alignment:
Q  89 gaacagaaactaatgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttatcagcatcatatgtttgct 188  Q
    |||||||||||||||||||| |||||    |||||| ||| ||||||||||||  |||||| |||||| | ||| ||| ||| ||| ||  ||||||||     
T  30279649 gaacagaaactaatgagactgggcaaacgttcaagttcaagagaacgcaacttggggaacagaatcttgttgatctctgtattagcttccgatgtttgca 30279550  T
Q  189 cagctatgatttctgtaatcattttgcaatcagaa 223  Q
    ||||||| |||||||||||||||||||||||||||    
T  30279549 cagctattatttctgtaatcattttgcaatcagaa 30279515  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 30029744 - 30029596
Alignment:
Q  71 tcaactgtcaataacacggaacagaaactaatgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttat 170  Q
    ||||||| ||||  ||| || ||||||||| |||||| ||||||    |||||| |||   ||||||||||  ||||||||| ||| |  | |||| |||    
T  30029744 tcaactgccaatggcacagagcagaaactactgagaccaggcaaacattcaagttcaagtaaacgcaacttggggaacataaccttgtttacttctatat 30029645  T
Q  171 cagcatcatatgtttgctcagctatgatttctgtaatcattttgcaatc 219  Q
    || | ||| ||||||||||||||||||||||||||||||||||||||||    
T  30029644 catcctcagatgtttgctcagctatgatttctgtaatcattttgcaatc 30029596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 30223882 - 30223734
Alignment:
Q  71 tcaactgtcaataacacggaacagaaactaatgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttat 170  Q
    ||||||| ||||  ||| || ||||||||| |||||| ||||||    |||||| |||   ||||||||||  ||||||||| ||| |  | |||| |||    
T  30223882 tcaactgccaatggcacagagcagaaactactgagaccaggcaaacattcaagttcaagtaaacgcaacttggggaacataaccttgtttacttctatat 30223783  T
Q  171 cagcatcatatgtttgctcagctatgatttctgtaatcattttgcaatc 219  Q
    || | ||| ||||||||||||||||||||||||||||||||||||||||    
T  30223782 catcctcagatgtttgctcagctatgatttctgtaatcattttgcaatc 30223734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 30147807 - 30147673
Alignment:
Q  89 gaacagaaactaatgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttatcagcatcatatgtttgct 188  Q
    ||||||||||||||||| || |||||    |||||| ||| ||||||||||||  || ||| |||||| | ||| ||||||| ||| ||  ||||||||     
T  30147807 gaacagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgca 30147708  T
Q  189 cagctatgatttctgtaatcattttgcaatcagaa 223  Q
    || |||| |||||||||||||||||||||| ||||    
T  30147707 caactattatttctgtaatcattttgcaattagaa 30147673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 30103773 - 30103625
Alignment:
Q  71 tcaactgtcaataacacggaacagaaactaatgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttat 170  Q
    ||||||| ||||  ||| || |||||||||||||||| ||||||    |||||| |||   || |||||||  ||||||||| ||| |  | |||| |||    
T  30103773 tcaactgccaatggcacagagcagaaactaatgagaccaggcaaacattcaagttcaagtaaatgcaacttggggaacataaccttgtttacttctatat 30103674  T
Q  171 cagcatcatatgtttgctcagctatgatttctgtaatcattttgcaatc 219  Q
    || | ||| |||||||||||| |||||||||||||||||||||||||||    
T  30103673 catcctcagatgtttgctcagttatgatttctgtaatcattttgcaatc 30103625  T

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