View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10979_low_17 (Length: 236)
Name: NF10979_low_17
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10979_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 6917813 - 6918013
Alignment:
| Q |
19 |
ccaatctatcctttttctctgcaagaaactctaccttctgtatcaatgcttcaatcatagcctcaaatcctcgattactaaaaagtgaaagaaagtgttg |
118 |
Q |
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| T |
6917813 |
ccaatctatcctgtttctctgcaagaaactctaccttctgtatcaatgcttcaatcctagcctcaaatcctcgattactaaaaagtgaaagaaagtgttg |
6917912 |
T |
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| Q |
119 |
tatcttgccttttggttgtgcgtcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcacgtct |
218 |
Q |
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| T |
6917913 |
catcctgccctttggttgtgcgtcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcacgtct |
6918012 |
T |
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| Q |
219 |
c |
219 |
Q |
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| T |
6918013 |
c |
6918013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 6590688 - 6590502
Alignment:
| Q |
19 |
ccaatctatcctttttctctgcaagaaactctaccttctgtatcaatgcttcaatcatagcctcaaatcctcgattactaaaaagtgaaagaaagtgttg |
118 |
Q |
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| T |
6590688 |
ccaatttatccttttgatctgcaagaaactctaggttctgtatcaatgctttaatcctagcttcaaatcctcgattaataaaacgtgaaagaaagcgtcg |
6590589 |
T |
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| Q |
119 |
tatcttgccttttggttgtgcgtcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagcca |
205 |
Q |
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| T |
6590588 |
tatcttgccctttggttgtgcgtcatcagcaatcacatccaatagttgctctaattcaaatacctcgtgtttgatatcatcaagcca |
6590502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 7750792 - 7750989
Alignment:
| Q |
19 |
ccaatctatcctttttctctgcaagaaactctaccttctgtatcaatgcttcaatcatagcctcaaatcctcgattactaaaaagtgaaagaaagtgttg |
118 |
Q |
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| T |
7750792 |
ccaatctatccttttgatcagcaagaaactctaggttctgtatcaatgcttcaatcctatcttcaaatcctcgcttaataaaaagtgaaagatagcgtcg |
7750891 |
T |
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| Q |
119 |
tatcttgccttttggttgtgcgtcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcacgt |
216 |
Q |
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| T |
7750892 |
catctttccctttgatcgtgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaattcttcacgt |
7750989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 8455505 - 8455578
Alignment:
| Q |
141 |
tcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcac |
214 |
Q |
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| T |
8455505 |
tcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcac |
8455578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 5281494 - 5281572
Alignment:
| Q |
133 |
gttgtgcgtcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattctt |
211 |
Q |
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| T |
5281494 |
gttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttctt |
5281572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 6519340 - 6519267
Alignment:
| Q |
141 |
tcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcac |
214 |
Q |
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| T |
6519340 |
tcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcac |
6519267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 8590580 - 8590653
Alignment:
| Q |
141 |
tcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcac |
214 |
Q |
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| T |
8590580 |
tcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcac |
8590653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 13269830 - 13269734
Alignment:
| Q |
119 |
tatcttgccttttggttgtgcgtcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcacg |
215 |
Q |
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| T |
13269830 |
tatcttcccctttcgttgtgcgtcagtaacaatcacatccaatagttgctctaattcgtatacctcattactgacatcatcaagccaattctccacg |
13269734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 6572479 - 6572431
Alignment:
| Q |
168 |
tctacttcatatacctcgtgtttgagatcatcaagccaattcttcacgt |
216 |
Q |
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| T |
6572479 |
tctacttcatatacctcatgttttagacgatcaagccaaatcttcacgt |
6572431 |
T |
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