View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10979_low_3 (Length: 548)

Name: NF10979_low_3
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10979_low_3
NF10979_low_3
[»] chr3 (5 HSPs)
chr3 (19-531)||(10995175-10995687)
chr3 (312-531)||(14243407-14243633)
chr3 (19-90)||(2237579-2237650)
chr3 (274-316)||(14248190-14248232)
chr3 (451-527)||(8478272-8478348)
[»] chr1 (4 HSPs)
chr1 (91-190)||(44025424-44025523)
chr1 (190-271)||(44027045-44027126)
chr1 (19-90)||(44025264-44025335)
chr1 (19-90)||(34807433-34807504)
[»] chr6 (2 HSPs)
chr6 (111-173)||(14707051-14707113)
chr6 (19-90)||(14707441-14707512)
[»] chr5 (1 HSPs)
chr5 (451-527)||(19937835-19937911)


Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Original strand, 10995175 - 10995687
Alignment:
Q  19 ataaggttactggtaaagtgaggcttctcatgaggcaatcgaagacactcaatatctgcgctaatcatctcattatacctacgatgagcgttcaagagta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10995175 ataaggttactggtaaagtgaggcttctcatgaggcaatcgaagacactcaatatctgcgctaatcatctcattatacctacgatgagcgttcaagagta 10995274  T
Q  119 tgatgagaatgagaaatcttgtgtttggcatgctagggattttgctgatggtgaacttaaggatgagctttttgcaaaatctttatggaaacattccaag 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10995275 tgatgagaatgagaaatcttgtgtttggcatgccagggattttgctgatggtgaacttaaggatgagctttttgcaaaatctttatggaaacattccaag 10995374  T
Q  219 aagttgccgagtcccagaagcaagtggatgaccaggatgcatctgcagcagcttctgattattcgaatgacaatctgcctctgccatccattcgagggga 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10995375 aagttgccgagtcccagaagcaagtggatgaccaggatgcatctgcagtagcttctgattattcgaatgacaatctgcctctgccatccattcgagggga 10995474  T
Q  319 ggttctaagcattaagatctcacagacagtctatgagaaaggattggatgcttgcaagcggaatttatgcggtcaattggttttaaacaagggtgataaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  10995475 ggttctaagcattaagatctcacagacagtctatgagaaaggattggatgcttgcaagcggaatttacgtggtcaattggttttaaacaagggtgataaa 10995574  T
Q  419 ccttacatgaaaaaggatctagaaatgaaaatctttggaagattacaggcgcgtggtccttgcgttctttaggaaggggattttatgaattctcatttgc 518  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10995575 ccttacatgaaaaaggatctagaaatgaaaatctttggaatattacaggcgcgtggtccttgcgttctttaggaaggggattttatgaattctcatttgc 10995674  T
Q  519 ctccgaggatgat 531  Q
    |||||||||||||    
T  10995675 ctccgaggatgat 10995687  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 312 - 531
Target Start/End: Complemental strand, 14243633 - 14243407
Alignment:
Q  312 gaggggaggttctaagcattaagatctcacagacagtctatgagaaaggattggatgcttgcaagcggaatttatgcggtcaattggttttaaacaaggg 411  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||||| ||||||  |||||||| ||||||||    
T  14243633 gaggggaggttctaagcattaagatctcgcagacagtgtatgagaaaggattggttgtttgcaagcggaatttacgcggtcgtttggttttgaacaaggg 14243534  T
Q  412 tgataaaccttacatgaaaaaggatctagaaatgaa-------aatctttggaagattacaggcgcgtggtccttgcgttctttaggaaggggattttat 504  Q
    ||||||||||||||||||||| ||||||||| ||||       || |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14243533 tgataaaccttacatgaaaaatgatctagaactgaaacttcagaagctttggaagattacaggcgcgtggtccttgtgttctttaggaaggggattttat 14243434  T
Q  505 gaattctcatttgcctccgaggatgat 531  Q
    |||||||||||||||||||||||||||    
T  14243433 gaattctcatttgcctccgaggatgat 14243407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 2237650 - 2237579
Alignment:
Q  19 ataaggttactggtaaagtgaggcttctcatgaggcaatcgaagacactcaatatctgcgctaatcatctca 90  Q
    ||||| ||||||||||||||| |||||| |||||||||||||| || || || || || |||||||||||||    
T  2237650 ataagtttactggtaaagtgaagcttcttatgaggcaatcgaaaacccttaagatttgtgctaatcatctca 2237579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 14248232 - 14248190
Alignment:
Q  274 tgattattcgaatgacaatctgcctctgccatccattcgaggg 316  Q
    ||||| || |||||||||||||||||||||||| |||||||||    
T  14248232 tgattctttgaatgacaatctgcctctgccatctattcgaggg 14248190  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 527
Target Start/End: Original strand, 8478272 - 8478348
Alignment:
Q  451 ctttggaagattacaggcgcgtggtccttgcgttctttaggaaggggattttatgaattctcatttgcctccgagga 527  Q
    ||||||||||   |||||||||||||| | | ||||||||| ||||| | ||||||||| |  ||||||||||||||    
T  8478272 ctttggaagacatcaggcgcgtggtcccttctttctttaggtaggggttattatgaattttattttgcctccgagga 8478348  T

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Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 44025424 - 44025523
Alignment:
Q  91 ttatacctacgatgagcgttcaagagtatgatgagaatgagaaatcttgtgtttggcatgctagggattttgctgatggtgaacttaaggatgagctttt 190  Q
    |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44025424 ttatacctacgatgagcgttcaagagcatgctgggaatgagaaatcttgtgtttggcatgctagggattttgctgatggtgaacttaaggatgagctttt 44025523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 44027045 - 44027126
Alignment:
Q  190 ttgcaaaatctttatggaaacattccaagaagttgccgagtcccagaagcaagtggatgaccaggatgcatctgcagcagct 271  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44027045 ttgcaaaagctttatggaaacattccaagaagttgccgagtcccagaagcaagtggatgaccaggatgcatctgcagcagct 44027126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 44025264 - 44025335
Alignment:
Q  19 ataaggttactggtaaagtgaggcttctcatgaggcaatcgaagacactcaatatctgcgctaatcatctca 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44025264 ataaggttactggtaaagtgaggcttctcatgaggcaatcgaagacactcaagatctgcgctaatcatctca 44025335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 34807504 - 34807433
Alignment:
Q  19 ataaggttactggtaaagtgaggcttctcatgaggcaatcgaagacactcaatatctgcgctaatcatctca 90  Q
    ||||| ||||||||||||| | |||||| |||||||||||||| || || || || || |||||||||||||    
T  34807504 ataagtttactggtaaagtaaagcttcttatgaggcaatcgaaaacccttaagatttgtgctaatcatctca 34807433  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 14707113 - 14707051
Alignment:
Q  111 caagagtatgatgagaatgagaaatcttgtgtttggcatgctagggattttgctgatggtgaa 173  Q
    |||||| ||| || |||||||||||||||||||||||| || | ||| |||||||||||||||    
T  14707113 caagagcatgctgggaatgagaaatcttgtgtttggcacgcgaaggactttgctgatggtgaa 14707051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 14707512 - 14707441
Alignment:
Q  19 ataaggttactggtaaagtgaggcttctcatgaggcaatcgaagacactcaatatctgcgctaatcatctca 90  Q
    ||||||||||||| ||||| |||||| | ||||| ||||| ||||| || || ||||| |||||||||||||    
T  14707512 ataaggttactggaaaagttaggcttgttatgagacaatcaaagactcttaagatctgtgctaatcatctca 14707441  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 527
Target Start/End: Complemental strand, 19937911 - 19937835
Alignment:
Q  451 ctttggaagattacaggcgcgtggtccttgcgttctttaggaaggggattttatgaattctcatttgcctccgagga 527  Q
    ||||||||||   |||||||||||||| ||| ||||||||| ||||| | ||||||||| |  ||||||||||||||    
T  19937911 ctttggaagacatcaggcgcgtggtccctgctttctttaggtaggggttattatgaattttattttgcctccgagga 19937835  T

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