View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10979_low_6 (Length: 455)
Name: NF10979_low_6
Description: NF10979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10979_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 45275603 - 45275181
Alignment:
| Q |
17 |
agatcgtggcagcaaagtcactgtcacttataatggcttatctgttaaaacttgttaaatgttgggtgcagttgcagaactatgcaaacgagatagggaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275603 |
agatcgtggcagcaaagtcactgtcacttataatggcttatctgttaaaacttgttgaatgttgggtgcagttgcagaactatgcaaacgagatagggaa |
45275504 |
T |
|
| Q |
117 |
ctgggttttgtgtcgtatattcacaaagaaaagaagtaatatagaaaacggttacatgatgaagagcaatatagtgatgaatactaatgttgaggtagct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275503 |
ttgggttttgtgtcgtatattcacaaagaaaagaagtaatatagaaaacggttacatgatgaagagcaatatagtgatgaatactaatgttgaggtagct |
45275404 |
T |
|
| Q |
217 |
cagccaagattctttgattttatgagggtacacaacttagctccggaccctactactcatttttctatatcgtcgtcttgttcgagttccagtgaggtct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275403 |
cagccaagattctttgattttatgagggtacacaacttagcttcggaccctactactcatttttctatatcgtcgtcttgttcgagttccagtgaggtct |
45275304 |
T |
|
| Q |
317 |
cttcatcagaagaacgatgcagcgatatatatactgatttttagttacattccttttatctgcaaagttaattgtttacgtcggtggaggaaaatggatc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
45275303 |
cttcatcagaagaacgatgcagcgatatatatactgatttttagttacattccttttatctgcaaagttaattgtttatgtctattgaggaaaatggatc |
45275204 |
T |
|
| Q |
417 |
acatgcttgagaattgttactct |
439 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
45275203 |
acatgcttgagaattgttactct |
45275181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University