View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1097_high_2 (Length: 435)
Name: NF1097_high_2
Description: NF1097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1097_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 36 - 423
Target Start/End: Original strand, 5422828 - 5423215
Alignment:
| Q |
36 |
aagatgatgaaaagtgtacatgccacacaaataaatggtgaatgtagcaataaagaacaccatagtatcttgccatccaatagagtactgagactgtgtt |
135 |
Q |
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| T |
5422828 |
aagatgatgaaaagtgtacatgccacacaaataaatggtaaatgtagcaataaagaacgccatagtatcttgccatccaatagagtactgagactgtgtt |
5422927 |
T |
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| Q |
136 |
tgaattggaaccattgaggattggtatgttgaaggattaggaaatggtaaccatagtgatctttgcattgagatggaattttattatctttgttgtgaat |
235 |
Q |
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| T |
5422928 |
tgaattggaaccattgaggattggtatgttgaaggattaggaaatggtaaccatagtgatctttgcattgagatggaattttattttctttgttgtcaat |
5423027 |
T |
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| Q |
236 |
tttcttgcataacaatataaggcctagagtactatatgttggagggaagaaaataatagattgaagaagacttgtagttgagataagaattagaattgga |
335 |
Q |
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| T |
5423028 |
tttcttgcataacaatataaggcctagagtactatatgttggagggaagaaaataatagattgaagaagacttgtagttgagataagaattagaattgga |
5423127 |
T |
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| Q |
336 |
attagaattagaagtgttgttcggttgttagttactagctagctttctatacttaacaaacagccaactgttttaatgtgagaatatt |
423 |
Q |
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| T |
5423128 |
attagaattagaagtgttgttcggttgttagttactagctagctttctatacttaacaaacagccaactgttttaatgtgagaatatt |
5423215 |
T |
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