View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1097_high_5 (Length: 400)
Name: NF1097_high_5
Description: NF1097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1097_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 204 - 388
Target Start/End: Original strand, 5423366 - 5423549
Alignment:
| Q |
204 |
attaattatagagtgcatatttgaattggttattgaaaagnnnnnnnn-cgcatatatatgtgtggtcgttagagagagagaaaaataccaatttgattt |
302 |
Q |
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| T |
5423366 |
attaattattgagtgcatatttgaattggttattgaaaagaaaaaaaaacgcatatatatgtgtggtcgttagag--agagaaaaataccaatttgattt |
5423463 |
T |
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| Q |
303 |
tcagaaatcttaaataccaatgaagataaaatgtgtcataatcataaaagactagttatattggtatatagataagtggcaagaat |
388 |
Q |
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| T |
5423464 |
tcagaaatcttaaatgccaatcaagataaaatgtgtcataatcataaaagactagttatattggtatatagataagtggcaagaat |
5423549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 5423174 - 5423309
Alignment:
| Q |
1 |
ctatacttaacaaacagccaactggtttaatgtgagaatattggtgggtatttgactgacaagtatactttcatgtgttaaaaagcatgaaatgaaatat |
100 |
Q |
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| T |
5423174 |
ctatacttaacaaacagccaactgttttaatgtgagaatattggtgggtatttgactgacaagtatactttcatgtgttaaaaagcatgaaatgaaata- |
5423272 |
T |
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| Q |
101 |
ttatgcgtcaagtcagtaagaatggagaggaaactaa |
137 |
Q |
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| T |
5423273 |
ttatgcatcaagtcagtaagaatggagaggaaactaa |
5423309 |
T |
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