View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1097_high_8 (Length: 319)
Name: NF1097_high_8
Description: NF1097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1097_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 14382111 - 14381830
Alignment:
| Q |
10 |
gcagagagaaagtaaagaaaattttaaagcgcattgatggtacttttactcttactagcttcaaatttcaaatctttttaggtttactcttacttagcat |
109 |
Q |
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| T |
14382111 |
gcagaaagaaagtaaagaaagttttaaagcgcattgatggtacttttactcttactagcttcaaatttcaaatctttttaggtttactcttacttagcat |
14382012 |
T |
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| Q |
110 |
tcttctttcttcttttaccatgcaaaactatgaaggtgttttcacggcaacaattgattcacaacaacaaaaagtaacagtaactggaaatgttggtgtt |
209 |
Q |
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| T |
14382011 |
tcttctttcttcttttaccatgcaaaactatgaaggtgttttcacggcaacaattgattcacaacaacaaaaagtaacagtaactggaaatgttggtgtt |
14381912 |
T |
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| Q |
210 |
gagacccttttaaggaagctggtcaaagctggaaagtacgctgagatttggccggagaatcttgacgggaagggaaaaagct |
291 |
Q |
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| T |
14381911 |
gagacccttttaaggaagctggtcaaagctggaaagtacgctgagatttggccggagaatcttgacgggaagggaaaaagct |
14381830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 49654075 - 49654190
Alignment:
| Q |
157 |
caacaattgattcacaacaacaaaaagtaacagtaactggaaatgttggtgttgagacccttttaaggaagctggtcaaagctggaaagtacgctgagat |
256 |
Q |
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||||||| ||| ||||||| | ||||||||||| || |||||||||| | | ||||| || ||||||| || | |||||||||||| |||| ||| | |
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| T |
49654075 |
caacaatcgatccacaacagaataaagtaacagtcaccggaaatgttgctctcgagactctgataaggaaacttgccaaagctggaaaacacgccgaggt |
49654174 |
T |
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| Q |
257 |
ttggccggagaatctt |
272 |
Q |
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| T |
49654175 |
tttgccggagaatctt |
49654190 |
T |
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