View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1097_high_9 (Length: 315)
Name: NF1097_high_9
Description: NF1097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1097_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 29104382 - 29104072
Alignment:
| Q |
1 |
acaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaatt |
100 |
Q |
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| T |
29104382 |
acaaagaaatcaaagccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaatt |
29104283 |
T |
|
| Q |
101 |
caatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaagga |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104282 |
caacagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaagga |
29104183 |
T |
|
| Q |
201 |
ttcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104182 |
ttcttccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctct |
29104083 |
T |
|
| Q |
301 |
gagatattctt |
311 |
Q |
| |
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||||||||||| |
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| T |
29104082 |
gagatattctt |
29104072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 29090106 - 29089807
Alignment:
| Q |
16 |
ccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgtta |
115 |
Q |
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|||||||||||||| || |||||||||||||| || ||||||||| ||||||| |||||| ||||||| |||||||| || ||||||| | | |||| |
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| T |
29090106 |
ccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaatcgattttctctttcaattcaacctctggtgtta |
29090007 |
T |
|
| Q |
116 |
aatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagc |
215 |
Q |
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||||||||||||||||||| ||||| || | | || | |||| ||||| || | | ||||| ||||| |||| ||||||| ||||||||||| |
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| T |
29090006 |
aatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgct |
29089907 |
T |
|
| Q |
216 |
ggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattcttcgac |
315 |
Q |
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||| ||||||||||| |||||||||| |||| | |||||||||| ||||| | | ||| ||||||||||||||||||| ||||| |||||||||||| |
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| T |
29089906 |
ggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatcttaccaagcttacagattacagcaacgtgctttctgaaatattcttcgac |
29089807 |
T |
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